RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 C2orf80Q0P641 193 aa12□□□□□ -0.49
VPS28-216ENST00000533806 MRPL49Q13405 166 aaKnown RBP12□□□□□ -0.49
VPS28-216ENST00000533806 NR6A1Q15406 480 aa12□□□□□ -0.49
VPS28-216ENST00000533806 LTB4RQ15722 352 aa12□□□□□ -0.49
VPS28-216ENST00000533806 TRMT12Q53H54 448 aaKnown RBP12□□□□□ -0.49
VPS28-216ENST00000533806 ZNF628Q5EBL2 1059 aa12□□□□□ -0.49
VPS28-216ENST00000533806 C6orf136Q5SQH8 315 aa12□□□□□ -0.49
VPS28-216ENST00000533806 FHL5Q5TD97 284 aa12□□□□□ -0.49
VPS28-216ENST00000533806 AGBL2Q5U5Z8 902 aa12□□□□□ -0.49
VPS28-216ENST00000533806 FAM180AQ6UWF9 173 aa12□□□□□ -0.49
VPS28-216ENST00000533806 RNF111Q6ZNA4 994 aa12□□□□□ -0.49
VPS28-216ENST00000533806 GALNTL5Q7Z4T8 443 aa12□□□□□ -0.49
VPS28-216ENST00000533806 TICAM1Q8IUC6 712 aa12□□□□□ -0.49
VPS28-216ENST00000533806 DDIASQ8IXT1 998 aa12□□□□□ -0.49
VPS28-216ENST00000533806 CCDC116Q8IYX3 515 aa12□□□□□ -0.49
VPS28-216ENST00000533806 SAMD14Q8IZD0 417 aaPredicted RBP12□□□□□ -0.49
VPS28-216ENST00000533806 CYP4Z2PQ8N1L4 340 aa12□□□□□ -0.49
VPS28-216ENST00000533806 VWA5B2Q8N398 1253 aa12□□□□□ -0.49
VPS28-216ENST00000533806 TMEM156Q8N614 296 aa12□□□□□ -0.49
VPS28-216ENST00000533806 SLC15A4Q8N697 577 aa12□□□□□ -0.49
VPS28-216ENST00000533806 BCORP1Q8N888 145 aa12□□□□□ -0.49
VPS28-216ENST00000533806 ZNF781Q8N8C0 355 aa12□□□□□ -0.49
VPS28-216ENST00000533806 TMEM178AQ8NBL3 297 aa12□□□□□ -0.49
VPS28-216ENST00000533806 ST6GALNAC3Q8NDV1 305 aa12□□□□□ -0.49
VPS28-216ENST00000533806 C17orf47Q8NEP4 570 aa12□□□□□ -0.49
VPS28-216ENST00000533806 C16orf52Q8NHV5 167 aa12□□□□□ -0.49
VPS28-216ENST00000533806 AGR3Q8TD06 166 aa12□□□□□ -0.49
VPS28-216ENST00000533806 NR4A3Q92570 626 aa12□□□□□ -0.49
VPS28-216ENST00000533806 ERP27Q96DN0 273 aa12□□□□□ -0.49
VPS28-216ENST00000533806 FRMD6Q96NE9 622 aa12□□□□□ -0.49
VPS28-216ENST00000533806 SH3GL2Q99962 352 aa12□□□□□ -0.49
VPS28-216ENST00000533806 OR10A5Q9H207 317 aa12□□□□□ -0.49
VPS28-216ENST00000533806 CLMPQ9H6B4 373 aa12□□□□□ -0.49
VPS28-216ENST00000533806 ASH1LQ9NR48 2969 aaKnown RBP12□□□□□ -0.49
VPS28-216ENST00000533806 KLHL1Q9NR64 748 aa12□□□□□ -0.49
VPS28-216ENST00000533806 GIMAP2Q9UG22 337 aa12□□□□□ -0.49
VPS28-216ENST00000533806 RAP2CQ9Y3L5 183 aa12□□□□□ -0.49
VPS28-216ENST00000533806 SNNO75324 88 aaPredicted RBP11.99□□□□□ -0.49
VPS28-216ENST00000533806 HSPA4LO95757 839 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 FBXO45P0C2W1 286 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 BCKDHAP12694 445 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 EDN3P14138 238 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 PCSK2P16519 638 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 EMDP50402 254 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 PMP22Q01453 160 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 BST1Q10588 318 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 STX3Q13277 289 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 PDE7AQ13946 482 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 MAPKAPK3Q16644 382 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 RNFT1Q5M7Z0 435 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 OPN5Q6U736 354 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 IL20RBQ6UXL0 311 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 SLC29A4Q7RTT9 530 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 SIAH3Q8IW03 269 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 SULF2Q8IWU5 870 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 ADCY4Q8NFM4 1077 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 PPP1R14CQ8TAE6 165 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 ASB15Q8WXK1 588 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 EXOSC8Q96B26 276 aaKnown RBP11.99□□□□□ -0.49
VPS28-216ENST00000533806 C5orf34Q96MH7 638 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 VIPAS39Q9H9C1 493 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 DEPPQ9NTK1 212 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 OLAHQ9NV23 265 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 BAIAP2L1Q9UHR4 511 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 DTX4Q9Y2E6 619 aa11.99□□□□□ -0.49
VPS28-216ENST00000533806 C2orf92A0A1B0GVN3 265 aa11.98□□□□□ -0.49
VPS28-216ENST00000533806 ATP6AP2A0A1C7CYW4 349 aa11.98□□□□□ -0.49
VPS28-216ENST00000533806 A8MVJ9 347 aa11.98□□□□□ -0.49
VPS28-216ENST00000533806 PLOD3O60568 738 aa11.98□□□□□ -0.49
VPS28-216ENST00000533806 PEX11AO75192 247 aa11.98□□□□□ -0.49
VPS28-216ENST00000533806 ATP6AP2O75787 350 aa11.98□□□□□ -0.49
VPS28-216ENST00000533806 CRYABP02511 175 aaKnown RBP11.98□□□□□ -0.49
VPS28-216ENST00000533806 GPX3P22352 226 aa11.98□□□□□ -0.49
VPS28-216ENST00000533806 MPIP34949 423 aa11.98□□□□□ -0.49
VPS28-216ENST00000533806 FRKP42685 505 aaPredicted RBP11.98□□□□□ -0.49
VPS28-216ENST00000533806 RPL14P50914 215 aaKnown RBP11.98□□□□□ -0.49
VPS28-216ENST00000533806 RPL38P63173 70 aaKnown RBP11.98□□□□□ -0.49
VPS28-216ENST00000533806 MRPS35P82673 323 aaKnown RBP11.98□□□□□ -0.49
VPS28-216ENST00000533806 SRSF11Q05519 484 aaKnown RBP11.98□□□□□ -0.49
VPS28-216ENST00000533806 EXOSC7Q15024 291 aaKnown RBP11.98□□□□□ -0.49
VPS28-216ENST00000533806 TTMPQ5BVD1 217 aa11.98□□□□□ -0.49
VPS28-216ENST00000533806 HHATQ5VTY9 493 aa11.98□□□□□ -0.49
VPS28-216ENST00000533806 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.98□□□□□ -0.49
VPS28-216ENST00000533806 ANKRD42Q8N9B4 389 aa11.98□□□□□ -0.49
VPS28-216ENST00000533806 ZFP62Q8NB50 900 aaPredicted RBP11.98□□□□□ -0.49
VPS28-216ENST00000533806 GOLM1Q8NBJ4 401 aa11.98□□□□□ -0.49
VPS28-216ENST00000533806 PSD4Q8NDX1 1056 aa11.98□□□□□ -0.49
VPS28-216ENST00000533806 OR9A2Q8NGT5 310 aa11.98□□□□□ -0.49
VPS28-216ENST00000533806 TMEM125Q96AQ2 219 aa11.98□□□□□ -0.49
VPS28-216ENST00000533806 NTNG2Q96CW9 530 aa11.98□□□□□ -0.49
VPS28-216ENST00000533806 ATP6V1G3Q96LB4 118 aa11.98□□□□□ -0.49
VPS28-216ENST00000533806 SGCZQ96LD1 299 aa11.98□□□□□ -0.49
VPS28-216ENST00000533806 PPP3R2Q96LZ3 170 aa11.98□□□□□ -0.49
VPS28-216ENST00000533806 ANKRA2Q9H9E1 313 aa11.98□□□□□ -0.49
VPS28-216ENST00000533806 HPF1Q9NWY4 346 aa11.98□□□□□ -0.49
VPS28-216ENST00000533806 KLF13Q9Y2Y9 288 aaPredicted RBP11.98□□□□□ -0.49
VPS28-216ENST00000533806 FLNBO75369 2602 aaKnown RBP11.97□□□□□ -0.49
VPS28-216ENST00000533806 ANKUB1A6NFN9 424 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 PLOD2O00469 737 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 PEX1O43933 1283 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms