RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 LASP1Q14847 261 aaKnown RBP19.69■□□□□ 0.74
VPS28-208ENST00000527797 PRICKLE4Q2TBC4 344 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 LRRC23Q53EV4 343 aaPredicted RBP19.69■□□□□ 0.74
VPS28-208ENST00000527797 TRMT12Q53H54 448 aaKnown RBP19.69■□□□□ 0.74
VPS28-208ENST00000527797 FAM111BQ6SJ93 734 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 RNF111Q6ZNA4 994 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 PACS2Q86VP3 889 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 PQLC1Q8N2U9 271 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 FBXO30Q8TB52 745 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 RAB8BQ92930 207 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 MS4A4EQ96PG1 132 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 SERHL2Q9H4I8 314 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 APMAPQ9HDC9 416 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 MKKSQ9NPJ1 570 aaPredicted RBP19.69■□□□□ 0.74
VPS28-208ENST00000527797 C6orf203Q9P0P8 240 aaPredicted RBP19.69■□□□□ 0.74
VPS28-208ENST00000527797 PRDM4Q9UKN5 801 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 C19orf53Q9UNZ5 99 aaPredicted RBP19.69■□□□□ 0.74
VPS28-208ENST00000527797 ANGPT4Q9Y264 503 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 V9GYQ6 96 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 NUP214P35658 2090 aaPredicted RBP19.68■□□□□ 0.74
VPS28-208ENST00000527797 TMEM247A6NEH6 219 aa19.68■□□□□ 0.74
VPS28-208ENST00000527797 TGFBR3LH3BV60 316 aa19.68■□□□□ 0.74
VPS28-208ENST00000527797 FOXD2O60548 495 aaPredicted RBP19.68■□□□□ 0.74
VPS28-208ENST00000527797 PLOD3O60568 738 aa19.68■□□□□ 0.74
VPS28-208ENST00000527797 OR12D1P0DN82 309 aa19.68■□□□□ 0.74
VPS28-208ENST00000527797 MAOAP21397 527 aa19.68■□□□□ 0.74
VPS28-208ENST00000527797 MAPK10P53779 464 aa19.68■□□□□ 0.74
VPS28-208ENST00000527797 MC2RQ01718 297 aa19.68■□□□□ 0.74
VPS28-208ENST00000527797 FAM98BQ52LJ0 330 aaKnown RBP19.68■□□□□ 0.74
VPS28-208ENST00000527797 FHL5Q5TD97 284 aa19.68■□□□□ 0.74
VPS28-208ENST00000527797 BMPERQ8N8U9 685 aa19.68■□□□□ 0.74
VPS28-208ENST00000527797 C7orf57Q8NEG2 295 aa19.68■□□□□ 0.74
VPS28-208ENST00000527797 PTCHD1Q96NR3 888 aa19.68■□□□□ 0.74
VPS28-208ENST00000527797 DGAT2Q96PD7 388 aa19.68■□□□□ 0.74
VPS28-208ENST00000527797 SEPHS2Q99611 448 aa19.68■□□□□ 0.74
VPS28-208ENST00000527797 PELOQ9BRX2 385 aaKnown RBP19.68■□□□□ 0.74
VPS28-208ENST00000527797 YIPF4Q9BSR8 244 aa19.68■□□□□ 0.74
VPS28-208ENST00000527797 ASPSCR1Q9BZE9 553 aa19.68■□□□□ 0.74
VPS28-208ENST00000527797 MAT2BQ9NZL9 334 aa19.68■□□□□ 0.74
VPS28-208ENST00000527797 RPS6KA6Q9UK32 745 aa19.68■□□□□ 0.74
VPS28-208ENST00000527797 SAMD4AQ9UPU9 718 aaKnown RBP19.68■□□□□ 0.74
VPS28-208ENST00000527797 RALGAPA1Q6GYQ0 2036 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 GIMAP1-GIMAP5A0A087WTJ2 511 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 OR2W5A6NFC9 320 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 C5orf58C9J3I9 102 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 TMX2-CTNND1H3BSU7 103 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 HNRNPRO43390 633 aaKnown RBP19.67■□□□□ 0.74
VPS28-208ENST00000527797 TGM1P22735 817 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 STT3AP46977 705 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 CHRNB3Q05901 458 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 MGAT2Q10469 447 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 MAP4K2Q12851 820 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 LARP7Q4G0J3 582 aaKnown RBP eCLIP19.67■□□□□ 0.74
VPS28-208ENST00000527797 MFSD4BQ5TF39 518 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 GALNT12Q8IXK2 581 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 SLC38A9Q8NBW4 561 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 OR5D16Q8NGK9 328 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 XAGE5Q8WWM1 108 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 GIMAP5Q96F15 307 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 C16orf58Q96GQ5 468 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 CMKLR1Q99788 373 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 CTRCQ99895 268 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 ACTRT3Q9BYD9 372 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 EQTNQ9NQ60 294 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 NECTIN3Q9NQS3 549 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 FBXO8Q9NRD0 319 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 CLDN16Q9Y5I7 305 aa19.67■□□□□ 0.74
VPS28-208ENST00000527797 PRKD3O94806 890 aa19.66■□□□□ 0.74
VPS28-208ENST00000527797 TFPTP0C1Z6 253 aa19.66■□□□□ 0.74
VPS28-208ENST00000527797 GCKP35557 465 aa19.66■□□□□ 0.74
VPS28-208ENST00000527797 SOX18P35713 384 aa19.66■□□□□ 0.74
VPS28-208ENST00000527797 PTDSS1P48651 473 aaKnown RBP19.66■□□□□ 0.74
VPS28-208ENST00000527797 MYBPC3Q14896 1274 aa19.66■□□□□ 0.74
VPS28-208ENST00000527797 REEP3Q6NUK4 255 aa19.66■□□□□ 0.74
VPS28-208ENST00000527797 ENPP6Q6UWR7 440 aa19.66■□□□□ 0.74
VPS28-208ENST00000527797 DGAT2L6Q6ZPD8 337 aa19.66■□□□□ 0.74
VPS28-208ENST00000527797 QSOX2Q6ZRP7 698 aa19.66■□□□□ 0.74
VPS28-208ENST00000527797 CCDC80Q76M96 950 aa19.66■□□□□ 0.74
VPS28-208ENST00000527797 METTL25Q8N6Q8 603 aa19.66■□□□□ 0.74
VPS28-208ENST00000527797 PAPD5Q8NDF8 572 aaKnown RBP19.66■□□□□ 0.74
VPS28-208ENST00000527797 DOK4Q8TEW6 326 aa19.66■□□□□ 0.74
VPS28-208ENST00000527797 SLC38A5Q8WUX1 472 aa19.66■□□□□ 0.74
VPS28-208ENST00000527797 RIT1Q92963 219 aa19.66■□□□□ 0.74
VPS28-208ENST00000527797 CTHRC1Q96CG8 243 aa19.66■□□□□ 0.74
VPS28-208ENST00000527797 RNF31Q96EP0 1072 aa19.66■□□□□ 0.74
VPS28-208ENST00000527797 RNF145Q96MT1 663 aa19.66■□□□□ 0.74
VPS28-208ENST00000527797 STRADBQ9C0K7 418 aa19.66■□□□□ 0.74
VPS28-208ENST00000527797 CXorf21Q9HAI6 301 aa19.66■□□□□ 0.74
VPS28-208ENST00000527797 P2RX2Q9UBL9 471 aa19.66■□□□□ 0.74
VPS28-208ENST00000527797 PCDHGA1Q9Y5H4 931 aa19.66■□□□□ 0.74
VPS28-208ENST00000527797 GDF9O60383 454 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 ZNF682O95780 498 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 IFNA16P05015 189 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 BCHEP06276 602 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 CT62P0C5K7 136 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 RAP2AP10114 183 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 CCL4P13236 92 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 AQP1P29972 269 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 GALNSP34059 522 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 DCDP81605 110 aaKnown RBP19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms