RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 PRICKLE4Q2TBC4 344 aa19.02■□□□□ 0.64
VPS28-206ENST00000526734 CHERPQ8IWX8 916 aaKnown RBP19.02■□□□□ 0.64
VPS28-206ENST00000526734 FAM109AQ8N4B1 249 aa19.02■□□□□ 0.64
VPS28-206ENST00000526734 BANPQ8N9N5 519 aa19.02■□□□□ 0.64
VPS28-206ENST00000526734 OR2W6PQ8NHA6 318 aa19.02■□□□□ 0.64
VPS28-206ENST00000526734 PHF10Q8WUB8 498 aaKnown RBP19.02■□□□□ 0.64
VPS28-206ENST00000526734 APIPQ96GX9 242 aa19.02■□□□□ 0.64
VPS28-206ENST00000526734 KCNA7Q96RP8 456 aa19.02■□□□□ 0.64
VPS28-206ENST00000526734 SECISBP2Q96T21 854 aaKnown RBP19.02■□□□□ 0.64
VPS28-206ENST00000526734 TTTY12Q9BZ98 90 aa19.02■□□□□ 0.64
VPS28-206ENST00000526734 MAT2BQ9NZL9 334 aa19.02■□□□□ 0.64
VPS28-206ENST00000526734 SH3BGRL2Q9UJC5 107 aa19.02■□□□□ 0.64
VPS28-206ENST00000526734 TINAGQ9UJW2 476 aa19.02■□□□□ 0.64
VPS28-206ENST00000526734 UTS2RQ9UKP6 389 aa19.02■□□□□ 0.64
VPS28-206ENST00000526734 BOKQ9UMX3 212 aaPredicted RBP19.02■□□□□ 0.64
VPS28-206ENST00000526734 PLLPQ9Y342 182 aa19.02■□□□□ 0.64
VPS28-206ENST00000526734 E9PLN8 166 aa19.01■□□□□ 0.63
VPS28-206ENST00000526734 TP53I11O14683 189 aa19.01■□□□□ 0.63
VPS28-206ENST00000526734 TRIM13O60858 407 aa19.01■□□□□ 0.63
VPS28-206ENST00000526734 BCAS2O75934 225 aaPredicted RBP19.01■□□□□ 0.63
VPS28-206ENST00000526734 IL3P08700 152 aa19.01■□□□□ 0.63
VPS28-206ENST00000526734 CT62P0C5K7 136 aa19.01■□□□□ 0.63
VPS28-206ENST00000526734 FEN1P39748 380 aaKnown RBP19.01■□□□□ 0.63
VPS28-206ENST00000526734 NR0B1P51843 470 aaKnown RBP19.01■□□□□ 0.63
VPS28-206ENST00000526734 RAE1P78406 368 aaKnown RBP19.01■□□□□ 0.63
VPS28-206ENST00000526734 ZNF763Q0D2J5 394 aa19.01■□□□□ 0.63
VPS28-206ENST00000526734 SPDYAQ5MJ70 313 aa19.01■□□□□ 0.63
VPS28-206ENST00000526734 XKRXQ6PP77 449 aa19.01■□□□□ 0.63
VPS28-206ENST00000526734 RNF165Q6ZSG1 346 aa19.01■□□□□ 0.63
VPS28-206ENST00000526734 SLC34A3Q8N130 599 aa19.01■□□□□ 0.63
VPS28-206ENST00000526734 MREGQ8N565 214 aa19.01■□□□□ 0.63
VPS28-206ENST00000526734 FAM57AQ8TBR7 257 aa19.01■□□□□ 0.63
VPS28-206ENST00000526734 ZNF675Q8TD23 568 aa19.01■□□□□ 0.63
VPS28-206ENST00000526734 DOK4Q8TEW6 326 aa19.01■□□□□ 0.63
VPS28-206ENST00000526734 CTHRC1Q96CG8 243 aa19.01■□□□□ 0.63
VPS28-206ENST00000526734 ZNF681Q96N22 645 aa19.01■□□□□ 0.63
VPS28-206ENST00000526734 VKORC1Q9BQB6 163 aa19.01■□□□□ 0.63
VPS28-206ENST00000526734 TMEM109Q9BVC6 243 aa19.01■□□□□ 0.63
VPS28-206ENST00000526734 BRINP2Q9C0B6 783 aa19.01■□□□□ 0.63
VPS28-206ENST00000526734 ZNF639Q9UID6 485 aa19.01■□□□□ 0.63
VPS28-206ENST00000526734 ENTPD4Q9Y227 616 aa19.01■□□□□ 0.63
VPS28-206ENST00000526734 MEMO1Q9Y316 297 aa19.01■□□□□ 0.63
VPS28-206ENST00000526734 KLF2Q9Y5W3 355 aaPredicted RBP19.01■□□□□ 0.63
VPS28-206ENST00000526734 ANKRD33BA6NCL7 494 aa19■□□□□ 0.63
VPS28-206ENST00000526734 CDC40O60508 579 aaKnown RBP eCLIP19■□□□□ 0.63
VPS28-206ENST00000526734 TUBBP07437 444 aa19■□□□□ 0.63
VPS28-206ENST00000526734 ANXA4P09525 319 aaPredicted RBP19■□□□□ 0.63
VPS28-206ENST00000526734 NAGAP17050 411 aa19■□□□□ 0.63
VPS28-206ENST00000526734 FOXA1P55317 472 aa19■□□□□ 0.63
VPS28-206ENST00000526734 DCAF7P61962 342 aa19■□□□□ 0.63
VPS28-206ENST00000526734 PSPHP78330 225 aa19■□□□□ 0.63
VPS28-206ENST00000526734 HSF1Q00613 529 aa19■□□□□ 0.63
VPS28-206ENST00000526734 PCLAFQ15004 111 aa19■□□□□ 0.63
VPS28-206ENST00000526734 RPS6KA2Q15349 733 aa19■□□□□ 0.63
VPS28-206ENST00000526734 C10orf107Q8IVU9 208 aa19■□□□□ 0.63
VPS28-206ENST00000526734 MMP21Q8N119 569 aa19■□□□□ 0.63
VPS28-206ENST00000526734 FAM13CQ8NE31 585 aa19■□□□□ 0.63
VPS28-206ENST00000526734 C16orf78Q8WTQ4 265 aa19■□□□□ 0.63
VPS28-206ENST00000526734 ITLN2Q8WWU7 325 aaPredicted RBP19■□□□□ 0.63
VPS28-206ENST00000526734 ADIPOR1Q96A54 375 aa19■□□□□ 0.63
VPS28-206ENST00000526734 CNRIP1Q96F85 164 aaPredicted RBP19■□□□□ 0.63
VPS28-206ENST00000526734 PFDN4Q9NQP4 134 aa19■□□□□ 0.63
VPS28-206ENST00000526734 SENP1Q9P0U3 644 aa19■□□□□ 0.63
VPS28-206ENST00000526734 PRODH2Q9UF12 536 aa19■□□□□ 0.63
VPS28-206ENST00000526734 NPFFR2Q9Y5X5 522 aa19■□□□□ 0.63
VPS28-206ENST00000526734 CHCHD2Q9Y6H1 151 aaPredicted RBP19■□□□□ 0.63
VPS28-206ENST00000526734 DIDO1Q9BTC0 2240 aaKnown RBP18.99■□□□□ 0.63
VPS28-206ENST00000526734 A0A0G2JMM0 328 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 A0A1B0GTH9 108 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 A0A1W2PPB8 328 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 A0A1W2PRS3 328 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 PINLYPA6NC86 204 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 OR14I1A6ND48 311 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 FAM166BA8MTA8 275 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 KIR3DP1A8MWS1 328 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 NPIPB8E9PQR5 432 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 ACOX3O15254 700 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 CHEK2O96017 543 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 IGHG3P01860 377 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 NEFHP12036 1026 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 S1PR1P21453 382 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 GPX3P22352 226 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 PRPH2P23942 346 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 KCNJ2P63252 427 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 MGAT2Q10469 447 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 FOXO1Q12778 655 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 IKBIPQ70UQ0 350 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 FGD2Q7Z6J4 655 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 MRGPRGQ86SM5 289 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 DOLPP1Q86YN1 238 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 SRRM1Q8IYB3 904 aaKnown RBP18.99■□□□□ 0.63
VPS28-206ENST00000526734 OR52N2Q8NGI0 321 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 HSPBAP1Q96EW2 488 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 SMC6Q96SB8 1091 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 QPCTLQ9NXS2 382 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 HEY2Q9UBP5 337 aa18.99■□□□□ 0.63
VPS28-206ENST00000526734 SEC23IPQ9Y6Y8 1000 aaKnown RBP18.99■□□□□ 0.63
VPS28-206ENST00000526734 G3V3Y1 287 aa18.98■□□□□ 0.63
VPS28-206ENST00000526734 SLC28A1O00337 649 aa18.98■□□□□ 0.63
VPS28-206ENST00000526734 SLITRK5O94991 958 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms