RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 TNRC6CQ9HCJ0 1690 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 NRAPQ86VF7 1730 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 C17orf113A0A1B0GUU1 675 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 RHPN2P1A8MT19 583 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 LCMT2O60294 686 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 MOCS2O96007 188 aaPredicted RBP11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 IGFBP1P08833 259 aaPredicted RBP11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 GJA1P17302 382 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 G0S2P27469 103 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 PSMD4P55036 377 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 CASP9P55211 416 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 ACTR1AP61163 376 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 POU4F2Q12837 409 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 GANABQ14697 944 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 DUOXA1Q1HG43 343 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 MICBQ29980 383 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 EFCAB12Q6NXP0 572 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 GPR142Q7Z601 462 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 SIAH3Q8IW03 269 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 HDDC3Q8N4P3 179 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 EIF4E3Q8N5X7 224 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 ZNF614Q8N883 585 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 CAMKVQ8NCB2 501 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 GPR26Q8NDV2 337 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 PROKR2Q8NFJ6 384 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 OR5M9Q8NGP3 310 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 RHEBL1Q8TAI7 183 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 OR4K3Q96R72 315 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 SMAD5Q99717 465 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 TSSK6Q9BXA6 273 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 JPH1Q9HDC5 661 aaPredicted RBP11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 MYOZ2Q9NPC6 264 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 RBM22Q9NW64 420 aaKnown RBP eCLIP11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 TEX10Q9NXF1 929 aaPredicted RBP11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 MEX3AA1L020 520 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 ZNF593O00488 134 aaPredicted RBP11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 CPSF4O95639 269 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 NR2C1P13056 603 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 PURAQ00577 322 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 TTLL4Q14679 1199 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 SLC5A12Q1EHB4 618 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 FAM76BQ5HYJ3 339 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 HMGB4Q8WW32 186 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 MAL2Q969L2 176 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 TCEAL4Q96EI5 215 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 SPATA5L1Q9BVQ7 753 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 SARS2Q9NP81 518 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 FLRT1Q9NZU1 646 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 RHCGQ9UBD6 479 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 RGPD3A6NKT7 1758 aaPredicted RBP11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 RGPD4Q7Z3J3 1758 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 C1orf196B1AJZ1 125 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 J3KTA2 159 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 RFXAPO00287 272 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 CLIC1O00299 241 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 FDXRP22570 491 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 LAP3P28838 519 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 RGS4P49798 205 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 PPT1P50897 306 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 GEMP55040 296 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 WNT3AP56704 352 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 UBE2IP63279 158 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 ADIGQ0VDE8 80 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 SKP2Q13309 424 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 GINS1Q14691 196 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 ZNF792Q3KQV3 632 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 RNF212Q495C1 297 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 CBLL1Q75N03 491 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 ZDHHC17Q8IUH5 632 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 SAMD12Q8N8I0 201 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 NEIL3Q8TAT5 605 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 C7orf34Q96L11 122 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 OR10A4Q9H209 315 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 TMEM134Q9H6X4 195 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 CA10Q9NS85 328 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 A0A1B0GW55 424 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 E9PQ18 207 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 G3V3G9 751 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 H3BN98 237 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 KHDRBS3O75525 346 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 DUX4L2P0CJ85 424 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 DUX4L3P0CJ86 424 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 DUX4L4P0CJ87 422 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 DUX4L5P0CJ88 424 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 DUX4L6P0CJ89 424 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 DUX4L7P0CJ90 424 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 MST1P26927 711 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 GCGRP47871 477 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 NDUFV1P49821 464 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 PSMA6P60900 246 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 PLK5Q496M5 336 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 SSX6Q7RTT6 188 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 FGD2Q7Z6J4 655 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 UNC93AQ86WB7 457 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 NUDT13Q86X67 352 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 TCEANCQ8N8B7 351 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 AQP11Q8NBQ7 271 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 ABHD1Q96SE0 405 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 DUX4Q9UBX2 424 aa11.44□□□□□ -0.58
LIMCH1-213ENST00000511496 PCNTO95613 3336 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms