RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 ERMAPQ96PL5 475 aaPredicted RBP6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 PITX2Q99697 317 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 SMOQ99835 787 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 HIST1H2AJQ99878 128 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 ACPTQ9BZG2 426 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 NKX6-2Q9C056 277 aaPredicted RBP6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 AUNIPQ9H7T9 357 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 NMNAT1Q9HAN9 279 aaPredicted RBP6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 TPT1P8Q9HAU6 139 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 ATP13A1Q9HD20 1204 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 TXNRD2Q9NNW7 524 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 POT1Q9NUX5 634 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 MGAT4CQ9UBM8 478 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 SRRDQ9UH36 339 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 PCDHGB7Q9Y5F8 929 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 PCDHGA5Q9Y5G8 931 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 PCDHGA1Q9Y5H4 931 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 MYLKQ15746 1914 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 HEPACAM2A8MVW5 462 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 SLC7A4O43246 635 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 SIGLEC6O43699 453 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 WNT1P04628 370 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 SHC1P29353 583 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 SLC6A1P30531 599 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 ATP6V1E1P36543 226 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 GSTM5P46439 218 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 SKP2Q13309 424 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 C2orf68Q2NKX9 166 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 FAM26DQ5JW98 314 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 FBXO47Q5MNV8 452 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 NOTUMQ6P988 496 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 C5orf46Q6UWT4 87 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 TMEM107Q6UX40 140 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 SEZ6L2Q6UXD5 910 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 NDUFAF7Q7L592 441 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 SP8Q8IXZ3 490 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 HDDC3Q8N4P3 179 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 OR52N1Q8NH53 320 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 SFT2D1Q8WV19 159 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 THAP4Q8WY91 577 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 RNFT2Q96EX2 444 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 CLMPQ9H6B4 373 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 ST3GAL5Q9UNP4 418 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 TNFSF13BQ9Y275 285 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 CHST2Q9Y4C5 530 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 PHLPP1O60346 1717 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 GLYATL1P3A0A0U1RQE8 302 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 IQCMA0A1B0GVH7 501 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 FAM86C2PA6NEL3 165 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 ANKDD1BA6NHY2 528 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 TMEM229AB2RXF0 380 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 DISC1C4P0D8 188 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 TAPBPO15533 448 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 RGS14O43566 566 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 OR2T1O43869 369 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 FMO6PO60774 539 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 SDC3O75056 442 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 GADD45GO95257 159 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 WISP3O95389 354 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 TSPAN12O95859 305 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 MMP2P08253 660 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 ADRB1P08588 477 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 CTPS1P17812 591 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 RNF144AP50876 292 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 CRISP1P54107 249 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 CSNK2BP67870 215 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 SRSF3P84103 164 aaKnown RBP6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 NFKB2Q00653 900 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 FLI1Q01543 452 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 PLA2G7Q13093 441 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 NAE1Q13564 534 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 MICAQ29983 383 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 PLA1AQ53H76 456 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 ACER2Q5QJU3 275 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 PRAMEF13Q5VWM6 474 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 C9orf57Q5W0N0 161 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 ATG9BQ674R7 924 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 SZRD1Q7Z422 152 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 MON1AQ86VX9 555 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 KRT78Q8N1N4 520 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 TMEM185AQ8NFB2 350 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 NR4A3Q92570 626 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 RFT1Q96AA3 541 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 DNAJA3Q96EY1 480 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 MSLNLQ96KJ4 702 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 TSNAXQ99598 290 aaKnown RBP6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 RAD9AQ99638 391 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 PAAF1Q9BRP4 392 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 GINS4Q9BRT9 223 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 TGIF2Q9GZN2 237 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 MFSD1Q9H3U5 465 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 EMC3Q9P0I2 261 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 GHRLQ9UBU3 117 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 PGAP2Q9UHJ9 254 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 RASD1Q9Y272 281 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 TLR6Q9Y2C9 796 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 A0A0A6YYC8 382 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 A0A1W2PPE3 182 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 EFCAB7A8K855 629 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 MAGEB17A8MXT2 336 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms