RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, human

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B1-212	ENST00000496458	OR6F1	Q8NGZ6	308 aa		4.28	□□□□□ -1.72
SF3B1-212	ENST00000496458	PSMA8	Q8TAA3	256 aa		4.28	□□□□□ -1.72
SF3B1-212	ENST00000496458	SLC13A3	Q8WWT9	602 aa		4.28	□□□□□ -1.72
SF3B1-212	ENST00000496458	SGF29	Q96ES7	293 aa		4.28	□□□□□ -1.72
SF3B1-212	ENST00000496458	ANKRD27	Q96NW4	1050 aa		4.28	□□□□□ -1.72
SF3B1-212	ENST00000496458	RCHY1	Q96PM5	261 aa		4.28	□□□□□ -1.72
SF3B1-212	ENST00000496458	LIME1	Q9H400	295 aa		4.28	□□□□□ -1.72
SF3B1-212	ENST00000496458	VPS37B	Q9H9H4	285 aa		4.28	□□□□□ -1.72
SF3B1-212	ENST00000496458	SLC35D1	Q9NTN3	355 aa		4.28	□□□□□ -1.72
SF3B1-212	ENST00000496458	RBM28	Q9NW13	759 aa	Known RBP	4.28	□□□□□ -1.72
SF3B1-212	ENST00000496458	RAI14	Q9P0K7	980 aa		4.28	□□□□□ -1.72
SF3B1-212	ENST00000496458	ARMCX3	Q9UH62	379 aa	Predicted RBP	4.28	□□□□□ -1.72
SF3B1-212	ENST00000496458	MGAT4A	Q9UM21	535 aa		4.28	□□□□□ -1.72
SF3B1-212	ENST00000496458	SPATA2	Q9UM82	520 aa		4.28	□□□□□ -1.72
SF3B1-212	ENST00000496458	NIP7	Q9Y221	180 aa	Known RBP eCLIP	4.28	□□□□□ -1.72
SF3B1-212	ENST00000496458	BCORL1	Q5H9F3	1711 aa		4.28	□□□□□ -1.72
SF3B1-212	ENST00000496458	A2M	P01023	1474 aa		4.28	□□□□□ -1.72
SF3B1-212	ENST00000496458	RTEL1-TNFRSF6B	F6WH68	1400 aa		4.28	□□□□□ -1.72
SF3B1-212	ENST00000496458	ABCC5	O15440	1437 aa		4.28	□□□□□ -1.72
SF3B1-212	ENST00000496458	DHX29	Q7Z478	1369 aa	Known RBP	4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	ARHGEF5	Q12774	1597 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	INO80	Q9ULG1	1556 aa	Predicted RBP	4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	ADAMTSL3	P82987	1691 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	RIMS1	Q86UR5	1692 aa	Known RBP	4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	TCOF1	Q13428	1488 aa	Known RBP	4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	ILVBL	A1L0T0	632 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	SYCE3	A1L190	88 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	CCDC162P	A2VCL2	907 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	ANKDD1B	A6NHY2	528 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	VGLL3	A8MV65	326 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	PES1	O00541	588 aa	Known RBP	4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	VENTX	O95231	258 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	THY1	P04216	161 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	RLN1	P04808	185 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	ALPP	P05187	535 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	DUX4L4	P0CJ87	422 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	ALPPL2	P10696	532 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	PDHB	P11177	359 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	KLK2	P20151	261 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	SULT1E1	P49888	294 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	SNU13	P55769	128 aa	Known RBP	4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	RUNX3	Q13761	415 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	CEACAM7	Q14002	265 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	TWISTNB	Q3B726	338 aa	Predicted RBP	4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	MAJIN	Q3KP22	176 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	NHLRC3	Q5JS37	347 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	CCDC183	Q5T5S1	534 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	PLPP4	Q5VZY2	271 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	RUFY3	Q7L099	469 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	OTUD6A	Q7L8S5	288 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	TBC1D10C	Q8IV04	446 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	TMEM99	Q8N816	258 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	SAP25	Q8TEE9	199 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	UTP14A	Q9BVJ6	771 aa	Known RBP	4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	NMUR1	Q9HB89	426 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	TNFRSF19	Q9NS68	423 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	AATF	Q9NY61	560 aa	Known RBP eCLIP	4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	HOXC10	Q9NYD6	342 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	SEPT10	Q9P0V9	454 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	ABCD2	Q9UBJ2	740 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	CLCA3P	Q9Y6N3	262 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	MADD	Q8WXG6	1647 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	DAPK1	P53355	1430 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	KDR	P35968	1356 aa		4.27	□□□□□ -1.73
SF3B1-212	ENST00000496458	ADGB	Q8N7X0	1667 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	PTPRM	P28827	1452 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	DNMT1	P26358	1616 aa	Known RBP	4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	ERICH4	A6NGS2	130 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	GPR89A	B7ZAQ6	455 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	DYNC1I1	O14576	645 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	SLC30A4	O14863	429 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	P2RX6	O15547	441 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	GRAP2	O75791	330 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	HCK	P08631	526 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	GPR89B	P0CG08	455 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	GHR	P10912	638 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	SPR	P35270	261 aa	Predicted RBP	4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	TRPC1	P48995	793 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	ADAR	P55265	1226 aa	Known RBP	4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	SH3BGR	P55822	239 aa	Predicted RBP	4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	GPR50	Q13585	617 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	FASTK	Q14296	549 aa	Known RBP	4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	RABL6	Q3YEC7	729 aa	Predicted RBP	4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	FUT11	Q495W5	492 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	CCDC40	Q4G0X9	1142 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	ATAD3C	Q5T2N8	411 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	PM20D1	Q6GTS8	502 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	CASC4	Q6P4E1	433 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	ZCCHC12	Q6PEW1	402 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	NHLRC2	Q8NBF2	726 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	KIAA0895	Q8NCT3	520 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	CCDC110	Q8TBZ0	833 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	PCNP	Q8WW12	178 aa	Known RBP	4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	SLC5A11	Q8WWX8	675 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	SEPT8	Q92599	483 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	PRCC	Q92733	491 aa	Predicted RBP	4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	DNASE1L2	Q92874	299 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	KCNK16	Q96T55	309 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	APOL2	Q9BQE5	337 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	ATG101	Q9BSB4	218 aa		4.26	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms