RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 DPH7Q9BTV6 452 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 BTBD1Q9H0C5 482 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PRSS16Q9NQE7 514 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 HCN3Q9P1Z3 774 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ZMAT5Q9UDW3 170 aaKnown RBP10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 UTS2RQ9UKP6 389 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 MGAT4AQ9UM21 535 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 WWP2O00308 870 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 RGS13O14921 159 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SOX14O95416 240 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ALPLP05186 524 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PVRP15151 417 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 FOSL1P15407 271 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 KELP23276 732 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 STOMP27105 288 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 DDOSTP39656 456 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PNLIPRP1P54315 467 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ATP12AP54707 1039 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 DLX2Q07687 328 aaPredicted RBP10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 LASP1Q14847 261 aaKnown RBP10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 LRRC70Q7Z2Q7 622 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 DGLUCYQ7Z3D6 616 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 FGD2Q7Z6J4 655 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PAPD5Q8NDF8 572 aaKnown RBP10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SETD6Q8TBK2 473 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 DTD2Q96FN9 168 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 FAM129BQ96TA1 746 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 IL21RQ9HBE5 538 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 FANCFQ9NPI8 374 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 NPAP1Q9NZP6 1156 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SEC14L3Q9UDX4 400 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SLC27A6Q9Y2P4 619 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SCN3AQ9NY46 2000 aa10.23□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 M0R129 80 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PRPS2P11908 318 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PRPS1L1P21108 318 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PPP2R1BP30154 601 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 BTN3A2P78410 334 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ADARB1P78563 741 aaKnown RBP10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 GPLD1P80108 840 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 TIAL1Q01085 375 aaKnown RBP eCLIP10.22□□□□□ -0.772e-9■■■■□ 19.7
MSH5-SAPCD1-207ENST00000493662 CAMK1Q14012 370 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 TSC22D1Q15714 1073 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 MINDY4Q4G0A6 757 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 DEFB134Q4QY38 66 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 USP30Q70CQ3 517 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 LAPTM4BQ86VI4 370 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ZFAND4Q86XD8 727 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 NETO1Q8TDF5 533 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PATE1Q8WXA2 126 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 MGLLQ99685 303 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SLC17A9Q9BYT1 436 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 P2RY12Q9H244 342 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PTGFRNQ9P2B2 879 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CLEC4AQ9UMR7 237 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 IRAK3Q9Y616 596 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 TRAV6A0A075B6T7 132 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SLC30A4O14863 429 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PPM1DO15297 605 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 FZD6O60353 706 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 IFNA14P01570 189 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 FGF4P08620 206 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 MAGEA2P43356 314 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CSNK1DP48730 415 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 RPP38P78345 283 aaKnown RBP10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PRKCDQ05655 676 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SMN1Q16637 294 aaKnown RBP10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PLEKHS1Q5SXH7 462 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 KIAA1211LQ6NV74 962 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 COMMD6Q7Z4G1 85 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SLC7A6Q92536 515 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 TMEM125Q96AQ2 219 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SGTBQ96EQ0 304 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 AHCYL2Q96HN2 611 aaKnown RBP10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 KCNK12Q9HB15 430 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ACOT13Q9NPJ3 140 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PHF11Q9UIL8 331 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SPNP16150 400 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 FPR1P21462 350 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 NTSP30990 170 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 TNFSF8P32971 234 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 DCTP40126 519 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 NCBP2P52298 156 aaKnown RBP eCLIP10.22□□□□□ -0.779e-7■■■■□ 23.4
MSH5-SAPCD1-207ENST00000493662 UGT2B15P54855 530 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 MLLT10P55197 1068 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CTBSQ01459 385 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 GPR68Q15743 365 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 TBPL2Q6SJ96 375 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SLC51BQ86UW2 128 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PM20D2Q8IYS1 436 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 UBQLNLQ8IYU4 475 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PIAS4Q8N2W9 510 aaPredicted RBP10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 OR8K3Q8NH51 312 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SLX1AQ9BQ83 275 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PLA2G2FQ9BZM2 168 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 MCUBQ9NWR8 336 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SLC23A2Q9UGH3 650 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CD300AQ9UGN4 299 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ANGPT4Q9Y264 503 aa10.22□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 KCNK2O95069 426 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms