RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 ZNF629Q9UEG4 869 aaPredicted RBP11.35□□□□□ -0.59
CPSF3-204ENST00000489403 RNF11Q9Y3C5 154 aa11.35□□□□□ -0.59
CPSF3-204ENST00000489403 HMX2A2RU54 273 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 CAPN14A8MX76 684 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 FOXE1O00358 373 aaPredicted RBP11.34□□□□□ -0.59
CPSF3-204ENST00000489403 TRAPPC6AO75865 159 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 SNX4O95219 450 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 SIX3O95343 332 aaPredicted RBP11.34□□□□□ -0.59
CPSF3-204ENST00000489403 ACSL3O95573 720 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 IL2RAP01589 272 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 HPNP05981 417 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 TACR1P25103 407 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 CASP3P42574 277 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 MAGEA4P43358 317 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 TMED10P49755 219 aaKnown RBP11.34□□□□□ -0.59
CPSF3-204ENST00000489403 PPP2R2AP63151 447 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 FUT7Q11130 342 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 ACAP2Q15057 778 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 TRADDQ15628 312 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 FAM83EQ2M2I3 478 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 EIPR1Q53HC9 387 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 NHSL2Q5HYW2 709 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 DCST1Q5T197 706 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 MROH9Q5TGP6 573 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 NSUN5P2Q63ZY6 315 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 VASNQ6EMK4 673 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 ZDHHC24Q6UX98 284 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 PRR22Q8IZ63 422 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 GOT1L1Q8NHS2 421 aaPredicted RBP11.34□□□□□ -0.59
CPSF3-204ENST00000489403 FAM222BQ8WU58 562 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 NTNG2Q96CW9 530 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 HSPBAP1Q96EW2 488 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 LRRC46Q96FV0 321 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 GNRHR2Q96P88 292 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 CDK15Q96Q40 435 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 SECISBP2Q96T21 854 aaKnown RBP11.34□□□□□ -0.59
CPSF3-204ENST00000489403 OR10A5Q9H207 317 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 MTRF1LQ9UGC7 380 aaKnown RBP11.34□□□□□ -0.59
CPSF3-204ENST00000489403 FOXD3Q9UJU5 478 aaPredicted RBP11.34□□□□□ -0.59
CPSF3-204ENST00000489403 PYCARDQ9ULZ3 195 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 CAMK2AQ9UQM7 478 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 DTX4Q9Y2E6 619 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 C15orf41Q9Y2V0 281 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 SLC6A5Q9Y345 797 aa11.34□□□□□ -0.59
CPSF3-204ENST00000489403 UTP11Q9Y3A2 253 aaKnown RBP11.34□□□□□ -0.59
CPSF3-204ENST00000489403 SETD2Q9BYW2 2564 aaPredicted RBP11.34□□□□□ -0.59
CPSF3-204ENST00000489403 HRNRQ86YZ3 2850 aaPredicted RBP11.33□□□□□ -0.6
CPSF3-204ENST00000489403 CCDC189A1A4V9 331 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 MBD3L4A6NDZ8 208 aaPredicted RBP11.33□□□□□ -0.6
CPSF3-204ENST00000489403 MBD3L3A6NE82 208 aaPredicted RBP11.33□□□□□ -0.6
CPSF3-204ENST00000489403 MBD3L5A6NJ08 208 aaPredicted RBP11.33□□□□□ -0.6
CPSF3-204ENST00000489403 OR7A17O14581 309 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 SEMA3DO95025 777 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 KLHL2O95198 593 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 HOXB4P17483 251 aaPredicted RBP11.33□□□□□ -0.6
CPSF3-204ENST00000489403 BMP7P18075 431 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 DNASE1P24855 282 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 PIK3R1P27986 724 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 ABCD3P28288 659 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 MASP1P48740 699 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 AGFG1P52594 562 aaKnown RBP11.33□□□□□ -0.6
CPSF3-204ENST00000489403 NRG3P56975 720 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 GUCY2DQ02846 1103 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 CAV1Q03135 178 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 FOXD4Q12950 439 aaPredicted RBP11.33□□□□□ -0.6
CPSF3-204ENST00000489403 TECRLQ5HYJ1 363 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 WIPI1Q5MNZ9 446 aaPredicted RBP11.33□□□□□ -0.6
CPSF3-204ENST00000489403 HLA-DQA1Q5Y7H0 255 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 PAMR1Q6UXH9 720 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 CCDC91Q7Z6B0 441 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 PACS2Q86VP3 889 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 OR4K14Q8NGD5 310 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 OR52B6Q8NGF0 335 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 MBD3L2Q8NHZ7 208 aaPredicted RBP11.33□□□□□ -0.6
CPSF3-204ENST00000489403 MRRFQ96E11 262 aaKnown RBP11.33□□□□□ -0.6
CPSF3-204ENST00000489403 WDYHV1Q96HA8 205 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 TMEM41AQ96HV5 264 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 GPR78Q96P69 363 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 ALPK1Q96QP1 1244 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 TRIB1Q96RU8 372 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 SERPINI1Q99574 410 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 UGT2B28Q9BY64 529 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 NXF5Q9H1B4 397 aaKnown RBP11.33□□□□□ -0.6
CPSF3-204ENST00000489403 NOL11Q9H8H0 719 aaKnown RBP11.33□□□□□ -0.6
CPSF3-204ENST00000489403 CPSF2Q9P2I0 782 aaKnown RBP11.33□□□□□ -0.6
CPSF3-204ENST00000489403 TNPO3Q9Y5L0 923 aaKnown RBP11.33□□□□□ -0.6
CPSF3-204ENST00000489403 ITPR3Q14573 2671 aa11.33□□□□□ -0.6
CPSF3-204ENST00000489403 DOCK7Q96N67 2140 aa11.32□□□□□ -0.6
CPSF3-204ENST00000489403 A0A096LPK6 155 aa11.32□□□□□ -0.6
CPSF3-204ENST00000489403 CD8B2A6NJW9 211 aa11.32□□□□□ -0.6
CPSF3-204ENST00000489403 GNB5O14775 395 aa11.32□□□□□ -0.6
CPSF3-204ENST00000489403 CLDN9O95484 217 aa11.32□□□□□ -0.6
CPSF3-204ENST00000489403 ALDOAP04075 364 aaKnown RBP11.32□□□□□ -0.6
CPSF3-204ENST00000489403 PYGBP11216 843 aa11.32□□□□□ -0.6
CPSF3-204ENST00000489403 S1PR1P21453 382 aa11.32□□□□□ -0.6
CPSF3-204ENST00000489403 NT5EP21589 574 aa11.32□□□□□ -0.6
CPSF3-204ENST00000489403 GPX3P22352 226 aa11.32□□□□□ -0.6
CPSF3-204ENST00000489403 PTPN6P29350 595 aa11.32□□□□□ -0.6
CPSF3-204ENST00000489403 ARL1P40616 181 aaPredicted RBP11.32□□□□□ -0.6
CPSF3-204ENST00000489403 RPP38P78345 283 aaKnown RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms