RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 C3orf18Q9UK00 162 aa8.17□□□□□ -1.1
USP4-213ENST00000488520 PPT2Q9UMR5 302 aa8.17□□□□□ -1.1
USP4-213ENST00000488520 MRPS33Q9Y291 106 aaKnown RBP8.17□□□□□ -1.1
USP4-213ENST00000488520 NIPBLQ6KC79 2804 aaeCLIP8.17□□□□□ -1.1
USP4-213ENST00000488520 MPDZO75970 2070 aa8.17□□□□□ -1.1
USP4-213ENST00000488520 GNG14A0A1W2PPG7 69 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 CLDN4O14493 209 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 POLR3GO15318 223 aaPredicted RBP8.16□□□□□ -1.1
USP4-213ENST00000488520 P2RX6O15547 441 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 GALR3O60755 368 aaPredicted RBP8.16□□□□□ -1.1
USP4-213ENST00000488520 WDPCPO95876 746 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 ONECUT2O95948 504 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 KLK1P06870 262 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 ITGAMP11215 1152 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 COX6A1P12074 109 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 IL1RNP18510 177 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 MDH1P40925 334 aaKnown RBP8.16□□□□□ -1.1
USP4-213ENST00000488520 KIR3DL1P43629 444 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 PRRC2AP48634 2157 aaKnown RBP8.16□□□□□ -1.1
USP4-213ENST00000488520 RBPJQ06330 500 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 MAD2L1Q13257 205 aaPredicted RBP8.16□□□□□ -1.1
USP4-213ENST00000488520 C3AR1Q16581 482 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 SPIN4Q56A73 249 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 KANK2Q63ZY3 851 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 NXNQ6DKJ4 435 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 ABHD17CQ6PCB6 329 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 XKRXQ6PP77 449 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 RPTNQ6XPR3 784 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 NCCRP1Q6ZVX7 275 aaPredicted RBP8.16□□□□□ -1.1
USP4-213ENST00000488520 NDUFAF7Q7L592 441 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 NUDT13Q86X67 352 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 ZNF781Q8N8C0 355 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 OR6Y1Q8NGX8 325 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 OR51Q1Q8NH59 317 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 PIWIL2Q8TC59 973 aaKnown RBP8.16□□□□□ -1.1
USP4-213ENST00000488520 ADAMTS18Q8TE60 1221 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 METTL21AQ8WXB1 218 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 HAS2Q92819 552 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 TUBGCP3Q96CW5 907 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 PPP3R2Q96LZ3 170 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 MKKSQ9NPJ1 570 aaPredicted RBP8.16□□□□□ -1.1
USP4-213ENST00000488520 FARSBQ9NSD9 589 aaKnown RBP8.16□□□□□ -1.1
USP4-213ENST00000488520 PNPOQ9NVS9 261 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 LYARQ9NX58 379 aaKnown RBP8.16□□□□□ -1.1
USP4-213ENST00000488520 TINAGQ9UJW2 476 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 ZNF225Q9UK10 706 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 NXT1Q9UKK6 140 aaKnown RBP8.16□□□□□ -1.1
USP4-213ENST00000488520 PSME2Q9UL46 239 aa8.16□□□□□ -1.1
USP4-213ENST00000488520 EIF3LQ9Y262 564 aaKnown RBP8.16□□□□□ -1.1
USP4-213ENST00000488520 MRPS2Q9Y399 296 aaKnown RBP8.16□□□□□ -1.1
USP4-213ENST00000488520 A0A0G2JN53 185 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 A0A1B0GTL3 188 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 FAM227AF5H4B4 570 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 PIP5K1BO14986 540 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 HDAC3O15379 428 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 ZNHIT1O43257 154 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 CHST10O43529 356 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 SLC19A2O60779 497 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 PEX11AO75192 247 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 SNNO75324 88 aaPredicted RBP8.15□□□□□ -1.1
USP4-213ENST00000488520 SKAP2O75563 359 aaPredicted RBP8.15□□□□□ -1.1
USP4-213ENST00000488520 RSL1D1O76021 490 aaKnown RBP8.15□□□□□ -1.1
USP4-213ENST00000488520 SEMA3DO95025 777 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 TGDSO95455 350 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 CRYABP02511 175 aaKnown RBP8.15□□□□□ -1.1
USP4-213ENST00000488520 HEXBP07686 556 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 SMIM10L1P0DMW3 83 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 TROVE2P10155 538 aaKnown RBP eCLIP8.15□□□□□ -1.1
USP4-213ENST00000488520 RNH1P13489 461 aaKnown RBP8.15□□□□□ -1.1
USP4-213ENST00000488520 DDX5P17844 614 aaKnown RBP8.15□□□□□ -1.1
USP4-213ENST00000488520 HIST1H1TP22492 207 aaPredicted RBP8.15□□□□□ -1.1
USP4-213ENST00000488520 CPN2P22792 545 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 JAK1P23458 1154 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 ATP5A1P25705 553 aaKnown RBP8.15□□□□□ -1.1
USP4-213ENST00000488520 SSTR2P30874 369 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 HNRNPH1P31943 449 aaKnown RBP8.15□□□□□ -1.1
USP4-213ENST00000488520 BUD31P41223 144 aaPredicted RBP8.15□□□□□ -1.1
USP4-213ENST00000488520 MAPK12P53778 367 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 EMP2P54851 167 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 CASP6P55212 293 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 FOXA1P55317 472 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 HMGCS1Q01581 520 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 GUCY1A3Q02108 690 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 RPS6KA2Q15349 733 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 PDCD2Q16342 344 aaPredicted RBP8.15□□□□□ -1.1
USP4-213ENST00000488520 INAQ16352 499 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 ADPRMQ3LIE5 342 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 GALNTL6Q49A17 601 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 ATP6AP1LQ52LC2 224 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 TCHHL1Q5QJ38 904 aaPredicted RBP8.15□□□□□ -1.1
USP4-213ENST00000488520 CDPF1Q6NVV7 123 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 MTFR2Q6P444 385 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 FAM47EQ6ZV65 393 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 CDH24Q86UP0 819 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 METTL4Q8N3J2 472 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 RNF175Q8N4F7 328 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 ACOT4Q8N9L9 421 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 SUN3Q8TAQ9 357 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 SMIM10Q96HG1 83 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 METTL2AQ96IZ6 378 aaKnown RBP8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms