RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 CYBRD1Q53TN4 286 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 CDCP2Q5VXM1 449 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 CA13Q8N1Q1 262 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 CBR4Q8N4T8 237 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 OR4K14Q8NGD5 310 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 OR1L3Q8NH93 324 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 ZNF501Q96CX3 271 aaPredicted RBP13.32□□□□□ -0.28
CUX1-209ENST00000487284 HSH2DQ96JZ2 352 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 SLC35G5Q96KT7 338 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 SPRTNQ9H040 489 aaPredicted RBP13.32□□□□□ -0.28
CUX1-209ENST00000487284 ANKHQ9HCJ1 492 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 ZCCHC3Q9NUD5 404 aaKnown RBP13.32□□□□□ -0.28
CUX1-209ENST00000487284 ADPRHL2Q9NX46 363 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 SIDT1Q9NXL6 827 aaKnown RBP13.32□□□□□ -0.28
CUX1-209ENST00000487284 ANGPT4Q9Y264 503 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 AK5Q9Y6K8 562 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 C7orf72A4D263 438 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 TMEM229AB2RXF0 380 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 HMGN4O00479 90 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 CYR61O00622 381 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 SLC30A4O14863 429 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 OR2B3O76000 313 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 DKK1O94907 266 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 RASAL1O95294 804 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 FHP07954 510 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 AQP1P29972 269 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 CSTF2P33240 577 aaKnown RBP eCLIP13.32□□□□□ -0.28
CUX1-209ENST00000487284 RAB38P57729 211 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 SIM1P81133 766 aaPredicted RBP13.32□□□□□ -0.28
CUX1-209ENST00000487284 NRF1Q16656 503 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 CRB2Q5IJ48 1285 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 TCTE1Q5JU00 501 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 NIPAL1Q6NVV3 410 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 TNFAIP8L2Q6P589 184 aaPredicted RBP13.32□□□□□ -0.28
CUX1-209ENST00000487284 BHLHB9Q6PI77 547 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 ZDHHC21Q8IVQ6 265 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 LRRC25Q8N386 305 aaPredicted RBP13.32□□□□□ -0.28
CUX1-209ENST00000487284 OR5T3Q8NGG3 340 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 OR56A1Q8NGH5 318 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 OR10Q1Q8NGQ4 319 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 MIPOL1Q8TD10 442 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 TMBIM1Q969X1 311 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 TBC1D20Q96BZ9 403 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 VPS50Q96JG6 964 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 OR6C1Q96RD1 312 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 IL1RAPQ9NPH3 570 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 ENAMQ9NRM1 1142 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 OCIAD1Q9NX40 245 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 THUMPD1Q9NXG2 353 aaKnown RBP13.32□□□□□ -0.28
CUX1-209ENST00000487284 ZNF451Q9Y4E5 1061 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 PDLIM1O00151 329 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 EMC8O43402 210 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 SUV39H1O43463 412 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 DENRO43583 198 aaKnown RBP13.31□□□□□ -0.28
CUX1-209ENST00000487284 RDH16O75452 317 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 MED26O95402 600 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 CST1P01037 141 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 KHKP50053 298 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 SKP1P63208 163 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 PRR5P85299 388 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 SHC2P98077 582 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 ACY1Q03154 408 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 FOLH1Q04609 750 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 FAM53BQ14153 422 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 NDUFA9Q16795 377 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 ISXQ2M1V0 245 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 HES3Q5TGS1 186 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 GARNL3Q5VVW2 1013 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 REEP3Q6NUK4 255 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 TMEM107Q6UX40 140 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 PIWIL3Q7Z3Z3 882 aaKnown RBP13.31□□□□□ -0.28
CUX1-209ENST00000487284 VTCN1Q7Z7D3 282 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 PATL1Q86TB9 770 aaKnown RBP13.31□□□□□ -0.28
CUX1-209ENST00000487284 ZC3H7AQ8IWR0 971 aaKnown RBP13.31□□□□□ -0.28
CUX1-209ENST00000487284 METTL25Q8N6Q8 603 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 AGBL5Q8NDL9 886 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 OR9A2Q8NGT5 310 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 OR9A4Q8NGU2 314 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 SLC38A5Q8WUX1 472 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 TAMM41Q96BW9 452 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 ELP4Q96EB1 424 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 NR1H4Q96RI1 486 aaPredicted RBP13.31□□□□□ -0.28
CUX1-209ENST00000487284 DOHHQ9BU89 302 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 Q9H521 79 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 FANCEQ9HB96 536 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 C3orf14Q9HBI5 128 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 NTMQ9P121 344 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 AP4B1Q9Y6B7 739 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 WDFY3Q8IZQ1 3526 aa13.31□□□□□ -0.28
CUX1-209ENST00000487284 FITM1A5D6W6 292 aa13.3□□□□□ -0.28
CUX1-209ENST00000487284 EFCAB7A8K855 629 aa13.3□□□□□ -0.28
CUX1-209ENST00000487284 SGK494L7N484 410 aa13.3□□□□□ -0.28
CUX1-209ENST00000487284 FOXS1O43638 330 aa13.3□□□□□ -0.28
CUX1-209ENST00000487284 CSO75390 466 aaKnown RBP13.3□□□□□ -0.28
CUX1-209ENST00000487284 MT-CO3P00414 261 aa13.3□□□□□ -0.28
CUX1-209ENST00000487284 TFPTP0C1Z6 253 aa13.3□□□□□ -0.28
CUX1-209ENST00000487284 CEACAM1P13688 526 aa13.3□□□□□ -0.28
CUX1-209ENST00000487284 CPMP14384 443 aa13.3□□□□□ -0.28
CUX1-209ENST00000487284 ZNF23P17027 643 aa13.3□□□□□ -0.28
CUX1-209ENST00000487284 PTGER1P34995 402 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms