RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 FOXD2O60548 495 aaPredicted RBP11.52□□□□□ -0.57
PTPRF-212ENST00000477970 LCKP06239 509 aa11.52□□□□□ -0.57
PTPRF-212ENST00000477970 HOXB2P14652 356 aa11.52□□□□□ -0.57
PTPRF-212ENST00000477970 CSNK2A2P19784 350 aaPredicted RBP11.52□□□□□ -0.57
PTPRF-212ENST00000477970 COL9A1P20849 921 aa11.52□□□□□ -0.57
PTPRF-212ENST00000477970 GPC1P35052 558 aa11.52□□□□□ -0.57
PTPRF-212ENST00000477970 CTSKP43235 329 aa11.52□□□□□ -0.57
PTPRF-212ENST00000477970 UGT2B15P54855 530 aa11.52□□□□□ -0.57
PTPRF-212ENST00000477970 KIR2DS3Q14952 304 aa11.52□□□□□ -0.57
PTPRF-212ENST00000477970 PGBD2Q6P3X8 592 aa11.52□□□□□ -0.57
PTPRF-212ENST00000477970 PLD3Q8IV08 490 aa11.52□□□□□ -0.57
PTPRF-212ENST00000477970 SAMD14Q8IZD0 417 aaPredicted RBP11.52□□□□□ -0.57
PTPRF-212ENST00000477970 GJD3Q8N144 294 aa11.52□□□□□ -0.57
PTPRF-212ENST00000477970 OR6Q1Q8NGQ2 317 aa11.52□□□□□ -0.57
PTPRF-212ENST00000477970 FLVCR1-AS1Q8TAF5 88 aa11.52□□□□□ -0.57
PTPRF-212ENST00000477970 NDNFQ8TB73 568 aa11.52□□□□□ -0.57
PTPRF-212ENST00000477970 GANCQ8TET4 914 aa11.52□□□□□ -0.57
PTPRF-212ENST00000477970 RAB8BQ92930 207 aa11.52□□□□□ -0.57
PTPRF-212ENST00000477970 ERLEC1Q96DZ1 483 aa11.52□□□□□ -0.57
PTPRF-212ENST00000477970 CNRIP1Q96F85 164 aaPredicted RBP11.52□□□□□ -0.57
PTPRF-212ENST00000477970 DNAAF2Q9NVR5 837 aaKnown RBP11.52□□□□□ -0.57
PTPRF-212ENST00000477970 LIPT1Q9Y234 373 aa11.52□□□□□ -0.57
PTPRF-212ENST00000477970 SLC9A8Q9Y2E8 581 aa11.52□□□□□ -0.57
PTPRF-212ENST00000477970 ATG4BQ9Y4P1 393 aa11.52□□□□□ -0.57
PTPRF-212ENST00000477970 A6NCN8 305 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 ADORA3P0DMS8 318 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 SMIM10L1P0DMW3 83 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 OPRL1P41146 370 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 IDH2P48735 452 aaKnown RBP11.51□□□□□ -0.57
PTPRF-212ENST00000477970 MAN2A2P49641 1150 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 PRR5P85299 388 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 FUT5Q11128 374 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 HTR4Q13639 388 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 SYPL1Q16563 259 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 CYP27C1Q4G0S4 372 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 NRROSQ86YC3 692 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 MINDY2Q8NBR6 621 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 OR4D11Q8NGI4 311 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 ZNF675Q8TD23 568 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 UCN3Q969E3 161 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 SMIM10Q96HG1 83 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 PRRC1Q96M27 445 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 WDR92Q96MX6 357 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 SLIRPQ9GZT3 109 aaKnown RBP11.51□□□□□ -0.57
PTPRF-212ENST00000477970 NXF2Q9GZY0 626 aaKnown RBP11.51□□□□□ -0.57
PTPRF-212ENST00000477970 ANKRD19PQ9H560 264 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 GIMAP4Q9NUV9 329 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 SPHK1Q9NYA1 384 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 APOBEC3BQ9UH17 382 aaKnown RBP11.51□□□□□ -0.57
PTPRF-212ENST00000477970 TBC1D3DA0A087WVF3 549 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 TBC1D3IA0A087WXS9 549 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 TBC1D3EA0A087X179 549 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 TBC1D3KA0A087X1G2 549 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 TBC1D3FA6NER0 549 aaPredicted RBP11.51□□□□□ -0.57
PTPRF-212ENST00000477970 TBC1D3LB9A6J9 549 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 LATO43561 262 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 ZBTB11O95625 1053 aaPredicted RBP11.51□□□□□ -0.57
PTPRF-212ENST00000477970 TBC1D3HP0C7X1 549 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 NR2F1P10589 423 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 DRD1P21728 446 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 CTHP32929 405 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 MPIP34949 423 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 PPP2CBP62714 309 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 PPP2CAP67775 309 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 SEC23BQ15437 767 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 OCLNQ16625 522 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 TIGD6Q17RP2 521 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 TBC1D3GQ6DHY5 549 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 TBC1D3CQ6IPX1 549 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 FAM180BQ6P0A1 224 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 TBC1D3Q8IZP1 549 aaPredicted RBP11.51□□□□□ -0.57
PTPRF-212ENST00000477970 OR8K5Q8NH50 307 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 UTP15Q8TED0 518 aaKnown RBP11.51□□□□□ -0.57
PTPRF-212ENST00000477970 GTPBP3Q969Y2 492 aaKnown RBP11.51□□□□□ -0.57
PTPRF-212ENST00000477970 CCDC59Q9P031 241 aaKnown RBP11.51□□□□□ -0.57
PTPRF-212ENST00000477970 MKLN1Q9UL63 735 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 NUMA1Q14980 2115 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 DOCK9Q9BZ29 2069 aa11.51□□□□□ -0.57
PTPRF-212ENST00000477970 EFCAB9A8MZ26 197 aa11.5□□□□□ -0.57
PTPRF-212ENST00000477970 PPM1DO15297 605 aa11.5□□□□□ -0.57
PTPRF-212ENST00000477970 SH3BP5O60239 455 aa11.5□□□□□ -0.57
PTPRF-212ENST00000477970 LIPAP38571 399 aa11.5□□□□□ -0.57
PTPRF-212ENST00000477970 YPEL5P62699 121 aa11.5□□□□□ -0.57
PTPRF-212ENST00000477970 ANKDD1AQ495B1 522 aa11.5□□□□□ -0.57
PTPRF-212ENST00000477970 C16orf87Q6PH81 154 aa11.5□□□□□ -0.57
PTPRF-212ENST00000477970 STX19Q8N4C7 294 aa11.5□□□□□ -0.57
PTPRF-212ENST00000477970 B3GNT7Q8NFL0 401 aa11.5□□□□□ -0.57
PTPRF-212ENST00000477970 COX4I2Q96KJ9 171 aa11.5□□□□□ -0.57
PTPRF-212ENST00000477970 TRNT1Q96Q11 434 aaKnown RBP11.5□□□□□ -0.57
PTPRF-212ENST00000477970 ARHGDIGQ99819 225 aa11.5□□□□□ -0.57
PTPRF-212ENST00000477970 C3orf14Q9HBI5 128 aa11.5□□□□□ -0.57
PTPRF-212ENST00000477970 MS4A12Q9NXJ0 267 aa11.5□□□□□ -0.57
PTPRF-212ENST00000477970 GIN1Q9NXP7 522 aa11.5□□□□□ -0.57
PTPRF-212ENST00000477970 TBC1D29Q9UFV1 150 aa11.5□□□□□ -0.57
PTPRF-212ENST00000477970 PCDHGA3Q9Y5H0 932 aa11.5□□□□□ -0.57
PTPRF-212ENST00000477970 CORINQ9Y5Q5 1042 aa11.5□□□□□ -0.57
PTPRF-212ENST00000477970 PMF1-BGLAPU3KQ54 211 aa11.5□□□□□ -0.57
PTPRF-212ENST00000477970 UGT2B17O75795 530 aa11.5□□□□□ -0.57
PTPRF-212ENST00000477970 TP53P04637 393 aaPredicted RBP11.5□□□□□ -0.57
PTPRF-212ENST00000477970 CHRM4P08173 479 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms