RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 TRPC4APQ8TEL6 797 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SLC44A1Q8WWI5 657 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CTHRC1Q96CG8 243 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CDK15Q96Q40 435 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 FRG2BQ96QU4 278 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 TIMP4Q99727 224 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ZNF559Q9BR84 538 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 LRRC1Q9BTT6 524 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SLC6A15Q9H2J7 730 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 NINJ2Q9NZG7 142 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ZNF639Q9UID6 485 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 NPFFR2Q9Y5X5 522 aa11.23□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 FAM47E-STBD1D6RA91 191 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 KIF2AO00139 706 aaPredicted RBP11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ABCB1P08183 1280 aaPredicted RBP11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 RBP1P09455 135 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CPMP14384 443 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 DNAJA1P31689 397 aaKnown RBP11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 TIMP3P35625 211 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CASP3P42574 277 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SERPINB8P50452 374 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CDK9P50750 372 aaKnown RBP11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 XKP51811 444 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 FBXW4P57775 412 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 MAP4K2Q12851 820 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 DUSP8Q13202 625 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 RPS6KA2Q15349 733 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 BICRALQ6AI39 1079 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 KLC3Q6P597 504 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ARSKQ6UWY0 536 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 PTGR2Q8N8N7 351 aaPredicted RBP11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 RELL2Q8NC24 303 aaPredicted RBP11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 NAXEQ8NCW5 288 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 MYRIPQ8NFW9 859 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 OR7G1Q8NGA0 311 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 OR4K14Q8NGD5 310 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 MRRFQ96E11 262 aaKnown RBP11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 NSUN5Q96P11 429 aaKnown RBP11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 GAL3ST4Q96RP7 486 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SH3GL2Q99962 352 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 DOHHQ9BU89 302 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 C1QTNF3Q9BXJ4 246 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 MRPL1Q9BYD6 325 aaKnown RBP11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 PRDM14Q9GZV8 571 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 OR10A5Q9H207 317 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CXXC4Q9H2H0 198 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 WDR41Q9HAD4 459 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CPSF2Q9P2I0 782 aaKnown RBP11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 B4GALT7Q9UBV7 327 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 FETUBQ9UGM5 382 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ZNF225Q9UK10 706 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 TMCO1Q9UM00 188 aa11.22□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 HSPB2A8KAH6 182 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CAPN14A8MX76 684 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 PPP6CO00743 305 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 TP53I11O14683 189 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SNX4O95219 450 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 LRATO95237 230 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 KLK1P06870 262 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 RPS17P08708 135 aaKnown RBP11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 COL6A2P12110 1019 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CD1EP15812 388 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 PORP16435 677 aaPredicted RBP11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 NAGAP17050 411 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 GPX3P22352 226 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 PIK3R1P27986 724 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ABCD3P28288 659 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CCNG1P51959 295 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 GALNT1Q10472 559 aaPredicted RBP11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 HSPB2Q16082 182 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 PRICKLE4Q2TBC4 344 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ACSF3Q4G176 576 aaPredicted RBP11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 TMEM198Q66K66 360 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SLC48A1Q6P1K1 146 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 GALNT12Q8IXK2 581 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 TNIP2Q8NFZ5 429 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 NRGNQ92686 78 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 DIO2Q92813 273 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 TM4SF18Q96CE8 201 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 PHF21BQ96EK2 531 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 RILPQ96NA2 401 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 GNRHR2Q96P88 292 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ALKBH4Q9NXW9 302 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ZNF629Q9UEG4 869 aaPredicted RBP11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 DMGDHQ9UI17 866 aaKnown RBP11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 DTX4Q9Y2E6 619 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 PCDHA9Q9Y5H5 950 aa11.21□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 NAV3Q8IVL0 2385 aa11.21□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 PCNX3Q9H6A9 2034 aa11.21□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CD8B2A6NJW9 211 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ACSL3O95573 720 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ATP1B1P05026 303 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ECHS1P30084 290 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 PHBP35232 272 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 PTGDSP41222 190 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 TRPC1P48995 793 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 IST1P53990 364 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CKAP4Q07065 602 aaKnown RBP11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 NSUN5P2Q63ZY6 315 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 TIGD3Q6B0B8 471 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms