RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 KRTCAP3Q53RY4 240 aa13.15□□□□□ -0.3
VAMP4-203ENST00000474047 BEND6Q5SZJ8 279 aaPredicted RBP13.15□□□□□ -0.3
VAMP4-203ENST00000474047 HHATQ5VTY9 493 aa13.15□□□□□ -0.3
VAMP4-203ENST00000474047 FAM111BQ6SJ93 734 aa13.15□□□□□ -0.3
VAMP4-203ENST00000474047 ANKRD42Q8N9B4 389 aa13.15□□□□□ -0.3
VAMP4-203ENST00000474047 C11orf24Q96F05 449 aaPredicted RBP13.15□□□□□ -0.3
VAMP4-203ENST00000474047 FRMD6Q96NE9 622 aa13.15□□□□□ -0.3
VAMP4-203ENST00000474047 MYNNQ9NPC7 610 aa13.15□□□□□ -0.3
VAMP4-203ENST00000474047 SACM1LQ9NTJ5 587 aa13.15□□□□□ -0.3
VAMP4-203ENST00000474047 TFECO14948 347 aaPredicted RBP13.14□□□□□ -0.31
VAMP4-203ENST00000474047 PIP5K1BO14986 540 aa13.14□□□□□ -0.31
VAMP4-203ENST00000474047 DDCP20711 480 aa13.14□□□□□ -0.31
VAMP4-203ENST00000474047 PRPH2P23942 346 aa13.14□□□□□ -0.31
VAMP4-203ENST00000474047 RFC3P40938 356 aa13.14□□□□□ -0.31
VAMP4-203ENST00000474047 RPL38P63173 70 aaKnown RBP13.14□□□□□ -0.31
VAMP4-203ENST00000474047 EXOSC7Q15024 291 aaKnown RBP13.14□□□□□ -0.31
VAMP4-203ENST00000474047 EBPQ15125 230 aaKnown RBP13.14□□□□□ -0.31
VAMP4-203ENST00000474047 PRICKLE4Q2TBC4 344 aa13.14□□□□□ -0.31
VAMP4-203ENST00000474047 SLC22A10Q63ZE4 541 aa13.14□□□□□ -0.31
VAMP4-203ENST00000474047 FAM47EQ6ZV65 393 aa13.14□□□□□ -0.31
VAMP4-203ENST00000474047 TICAM1Q8IUC6 712 aa13.14□□□□□ -0.31
VAMP4-203ENST00000474047 DND1Q8IYX4 353 aaKnown RBP13.14□□□□□ -0.31
VAMP4-203ENST00000474047 GOLM1Q8NBJ4 401 aa13.14□□□□□ -0.31
VAMP4-203ENST00000474047 TP53INP1Q96A56 240 aa13.14□□□□□ -0.31
VAMP4-203ENST00000474047 ZNF681Q96N22 645 aa13.14□□□□□ -0.31
VAMP4-203ENST00000474047 TUBB1Q9H4B7 451 aa13.14□□□□□ -0.31
VAMP4-203ENST00000474047 RYDENQ9NUL5 291 aaKnown RBP13.14□□□□□ -0.31
VAMP4-203ENST00000474047 MAT2BQ9NZL9 334 aa13.14□□□□□ -0.31
VAMP4-203ENST00000474047 SLC5A6Q9Y289 635 aa13.14□□□□□ -0.31
VAMP4-203ENST00000474047 ZGRF1Q86YA3 2104 aa13.14□□□□□ -0.31
VAMP4-203ENST00000474047 UBR5O95071 2799 aaPredicted RBP13.14□□□□□ -0.31
VAMP4-203ENST00000474047 TMEM114B3SHH9 223 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 G3V3Y1 287 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 SKAP2O75563 359 aaPredicted RBP13.13□□□□□ -0.31
VAMP4-203ENST00000474047 BCAS2O75934 225 aaPredicted RBP13.13□□□□□ -0.31
VAMP4-203ENST00000474047 SERPINE1P05121 402 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 CNR1P21554 472 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 MAPK1P28482 360 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 NTSP30990 170 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 TDGF1P3P51864 188 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 CASP6P55212 293 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 LTB4RQ15722 352 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 FAM71E1Q6IPT2 247 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 GK5Q6ZS86 529 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 RNF165Q6ZSG1 346 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 Q6ZSR9 355 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 IKBIPQ70UQ0 350 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 FAM9CQ8IZT9 166 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 ZNF615Q8N8J6 731 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 OR5M3Q8NGP4 307 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 OR2T11Q8NH01 316 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 C16orf52Q8NHV5 167 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 GFM2Q969S9 779 aaKnown RBP13.13□□□□□ -0.31
VAMP4-203ENST00000474047 SPACA9Q96E40 222 aaPredicted RBP13.13□□□□□ -0.31
VAMP4-203ENST00000474047 PPP3R2Q96LZ3 170 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 PRODH2Q9UF12 536 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 ZDHHC2Q9UIJ5 367 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 TMED5Q9Y3A6 229 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 CCL27Q9Y4X3 112 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 ACOT7O00154 380 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 TP53I11O14683 189 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 ZNF354AO60765 605 aaPredicted RBP13.13□□□□□ -0.31
VAMP4-203ENST00000474047 PEX11AO75192 247 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 SEMA7AO75326 666 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 CLPSP04118 112 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 PCSK2P16519 638 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 GRK2P25098 689 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 TMED10P49755 219 aaKnown RBP13.13□□□□□ -0.31
VAMP4-203ENST00000474047 NCBP2P52298 156 aaKnown RBP eCLIP13.13□□□□□ -0.31
VAMP4-203ENST00000474047 ABCE1P61221 599 aaKnown RBP13.13□□□□□ -0.31
VAMP4-203ENST00000474047 MRPS35P82673 323 aaKnown RBP13.13□□□□□ -0.31
VAMP4-203ENST00000474047 DUSP2Q05923 314 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 ATP6AP1LQ52LC2 224 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 TRMT12Q53H54 448 aaKnown RBP13.13□□□□□ -0.31
VAMP4-203ENST00000474047 TNFAIP8L3Q5GJ75 292 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 OR52R1Q8NGF1 315 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 OR9A2Q8NGT5 310 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 KAT2AQ92830 837 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 MAGED4Q96JG8 741 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 GPR137Q96N19 417 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 CCT7Q99832 543 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 FAM173AQ9BQD7 235 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 NKIRAS1Q9NYS0 192 aa13.13□□□□□ -0.31
VAMP4-203ENST00000474047 LSM1O15116 133 aaKnown RBP13.12□□□□□ -0.31
VAMP4-203ENST00000474047 AKAP10O43572 662 aa13.12□□□□□ -0.31
VAMP4-203ENST00000474047 ASNA1O43681 348 aa13.12□□□□□ -0.31
VAMP4-203ENST00000474047 LYPLA1O75608 230 aaPredicted RBP13.12□□□□□ -0.31
VAMP4-203ENST00000474047 JUNP05412 331 aaKnown RBP13.12□□□□□ -0.31
VAMP4-203ENST00000474047 S1PR1P21453 382 aa13.12□□□□□ -0.31
VAMP4-203ENST00000474047 BGNP21810 368 aa13.12□□□□□ -0.31
VAMP4-203ENST00000474047 SLC1A6P48664 564 aa13.12□□□□□ -0.31
VAMP4-203ENST00000474047 PER3P56645 1201 aa13.12□□□□□ -0.31
VAMP4-203ENST00000474047 MAGOHP61326 146 aaKnown RBP13.12□□□□□ -0.31
VAMP4-203ENST00000474047 SRSF1Q07955 248 aaKnown RBP eCLIP13.12□□□□□ -0.31
VAMP4-203ENST00000474047 MGAT2Q10469 447 aa13.12□□□□□ -0.31
VAMP4-203ENST00000474047 STX3Q13277 289 aa13.12□□□□□ -0.31
VAMP4-203ENST00000474047 CASP8Q14790 479 aa13.12□□□□□ -0.31
VAMP4-203ENST00000474047 KIAA0040Q15053 153 aa13.12□□□□□ -0.31
VAMP4-203ENST00000474047 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.12□□□□□ -0.31
VAMP4-203ENST00000474047 ZNF791Q3KP31 576 aaPredicted RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms