RNA–Protein interactions for RNA: ENST00000473854.5

CCDC39-203, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 487 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-203ENST00000473854 HADHAP40939 763 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 TNNT3P45378 269 aaPredicted RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 RPL21P46778 160 aaKnown RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 KCNJ1P48048 391 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 LEPRP48357 1165 aaKnown RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 RXRGP48443 463 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 SLC26A2P50443 739 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 ARSEP51690 589 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 GPR143P51810 404 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 MFAP3P55082 362 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 NAP1L1P55209 391 aaKnown RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 CDH8P55286 799 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 GEMIN4P57678 1058 aaKnown RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 PPIAP62937 165 aaKnown RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 TNNC1P63316 161 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 CCNA1P78396 465 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 MRPS6P82932 125 aaKnown RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 PPP2R2BQ00005 443 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 TFAMQ00059 246 aaKnown RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 GUCY2DQ02846 1103 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 GABPB1Q06547 395 aaPredicted RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 DMTNQ08495 405 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 NIPAL4Q0D2K0 466 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 INCA1Q0VD86 236 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 MAMLD1Q13495 774 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 TFDP1Q14186 410 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 MXD4Q14582 209 aaPredicted RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 MESDQ14696 234 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 TMEM132DQ14C87 1099 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 ZBTB6Q15916 424 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 TAZQ16635 292 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 MAPK6Q16659 721 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 CA9Q16790 459 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 GOLGA7BQ2TAP0 167 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 DCAF4L1Q3SXM0 396 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 CFAP221Q4G0U5 840 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 KLHL26Q53HC5 615 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 SEL1L2Q5TEA6 688 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 GKAP1Q5VSY0 366 aaPredicted RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 DUPD1Q68J44 220 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 FAM109BQ6ICB4 259 aaPredicted RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 KIAA0930Q6ICG6 404 aaPredicted RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 DNAJC24Q6P3W2 148 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 KLHL35Q6PF15 583 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 CXCL17Q6UXB2 119 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 MFSD7Q6UXD7 560 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 CD300LGQ6UXG3 332 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 ALKAL1Q6UXT8 129 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 GLDNQ6ZMI3 551 aaPredicted RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 CFAP77Q6ZQR2 320 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 FAM183BPQ6ZVS7 135 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 ENOSF1Q7L5Y1 443 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 PEX26Q7Z412 305 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 MTERF4Q7Z6M4 381 aaKnown RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 ZNF410Q86VK4 478 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 VPS36Q86VN1 386 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 ZNF677Q86XU0 584 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 PHF13Q86YI8 300 aaPredicted RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 SLC13A5Q86YT5 568 aaPredicted RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 ARHGAP12Q8IWW6 846 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 KRT222Q8N1A0 295 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 MREGQ8N565 214 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 C12orf29Q8N999 325 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 STKLD1Q8NE28 680 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 VANGL1Q8TAA9 524 aaPredicted RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 C1orf54Q8WWF1 131 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 DNAJB3Q8WWF6 145 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 TCP11Q8WWU5 503 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 ZNF606Q8WXB4 792 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 RAPGEF5Q92565 580 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 C18orf25Q96B23 403 aaPredicted RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 HAUS1Q96CS2 278 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 ELMOD3Q96FG2 381 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 ANKRD36BP1Q96IX9 119 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 RPGRIP1Q96KN7 1286 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 C1orf74Q96LT6 269 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 CMTM3Q96MX0 182 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 MCEEQ96PE7 176 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 FNBP1Q96RU3 617 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 CPXM1Q96SM3 734 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 GAD1Q99259 594 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 JPH2Q9BR39 696 aaPredicted RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 SRSF8Q9BRL6 282 aaKnown RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 ABHD6Q9BV23 337 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 APOL6Q9BWW8 343 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 FAM49AQ9H0Q0 323 aaPredicted RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 DPH5Q9H2P9 285 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 CDC42EP4Q9H3Q1 356 aaKnown RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 AZI2Q9H6S1 392 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 C10orf88Q9H8K7 445 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 VIPAS39Q9H9C1 493 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 ZCCHC17Q9NP64 241 aaKnown RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 SDR39U1Q9NRG7 319 aaPredicted RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 NRBP2Q9NSY0 501 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 FAM49BQ9NUQ9 324 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 SETD4Q9NVD3 440 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 PRMT7Q9NVM4 692 aaPredicted RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 ARGLU1Q9NWB6 273 aaPredicted RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 EURLQ9NYK6 297 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 NPAP1Q9NZP6 1156 aa1.32□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms