RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 PORP16435 677 aaPredicted RBP16.46■□□□□ 0.23
COL7A1-205ENST00000465238 MAD2L1Q13257 205 aaPredicted RBP16.46■□□□□ 0.23
COL7A1-205ENST00000465238 ART3Q13508 389 aa16.46■□□□□ 0.23
COL7A1-205ENST00000465238 TUBA3CQ13748 450 aa16.46■□□□□ 0.23
COL7A1-205ENST00000465238 FCRLBQ6BAA4 426 aa16.46■□□□□ 0.23
COL7A1-205ENST00000465238 SP5Q6BEB4 398 aaPredicted RBP16.46■□□□□ 0.23
COL7A1-205ENST00000465238 TUBA3EQ6PEY2 450 aa16.46■□□□□ 0.23
COL7A1-205ENST00000465238 IKBIPQ70UQ0 350 aa16.46■□□□□ 0.23
COL7A1-205ENST00000465238 SLC5A8Q8N695 610 aa16.46■□□□□ 0.23
COL7A1-205ENST00000465238 FNDC5Q8NAU1 212 aa16.46■□□□□ 0.23
COL7A1-205ENST00000465238 MARVELD3Q96A59 401 aa16.46■□□□□ 0.23
COL7A1-205ENST00000465238 VMP1Q96GC9 406 aa16.46■□□□□ 0.23
COL7A1-205ENST00000465238 FCRL1Q96LA6 429 aa16.46■□□□□ 0.23
COL7A1-205ENST00000465238 UTP23Q9BRU9 249 aaKnown RBP16.46■□□□□ 0.23
COL7A1-205ENST00000465238 NUF2Q9BZD4 464 aa16.46■□□□□ 0.23
COL7A1-205ENST00000465238 MIEF1Q9NQG6 463 aa16.46■□□□□ 0.23
COL7A1-205ENST00000465238 MARCOQ9UEW3 520 aaPredicted RBP16.46■□□□□ 0.23
COL7A1-205ENST00000465238 UTS2RQ9UKP6 389 aa16.46■□□□□ 0.23
COL7A1-205ENST00000465238 TRPC5OSA6NMA1 111 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 DYNC1I1O14576 645 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 HDAC3O15379 428 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 BCKDHAP12694 445 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 CPMP14384 443 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 SDC1P18827 310 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 CSNK2A2P19784 350 aaPredicted RBP16.45■□□□□ 0.22
COL7A1-205ENST00000465238 DDCP20711 480 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 TACR1P25103 407 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 FEN1P39748 380 aaKnown RBP16.45■□□□□ 0.22
COL7A1-205ENST00000465238 CA7P43166 264 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 CLCN2P51788 898 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 HK2P52789 917 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 PMP22Q01453 160 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 FAM71E1Q6IPT2 247 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 SAMD14Q8IZD0 417 aaPredicted RBP16.45■□□□□ 0.22
COL7A1-205ENST00000465238 LGI4Q8N135 537 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 MDS2Q8NDY4 140 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 PUM2Q8TB72 1066 aaKnown RBP eCLIP16.45■□□□□ 0.22
COL7A1-205ENST00000465238 PIWIL2Q8TC59 973 aaKnown RBP16.45■□□□□ 0.22
COL7A1-205ENST00000465238 ELP5Q8TE02 316 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 CKAP2Q8WWK9 683 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 RIT1Q92963 219 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 NCLNQ969V3 563 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 EXOSC8Q96B26 276 aaKnown RBP16.45■□□□□ 0.22
COL7A1-205ENST00000465238 ART5Q96L15 291 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 MAGEB18Q96M61 343 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 C7orf26Q96N11 449 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 TSSK3Q96PN8 268 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 DEFB126Q9BYW3 111 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 OR8D2Q9GZM6 311 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 RUBCNLQ9H714 662 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 GIMAP4Q9NUV9 329 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 EHD3Q9NZN3 535 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 BAIAP2L1Q9UHR4 511 aa16.45■□□□□ 0.22
COL7A1-205ENST00000465238 PPIEQ9UNP9 301 aaKnown RBP16.45■□□□□ 0.22
COL7A1-205ENST00000465238 EIF3LQ9Y262 564 aaKnown RBP16.45■□□□□ 0.22
COL7A1-205ENST00000465238 KLF2Q9Y5W3 355 aaPredicted RBP16.45■□□□□ 0.22
COL7A1-205ENST00000465238 CCL21O00585 134 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 CDK2AP1O14519 115 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 PRPS2P11908 318 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 CD46P15529 392 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 GALNSP34059 522 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 CD96P40200 585 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 ASMTP46597 345 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 CASP6P55212 293 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 EMX2Q04743 252 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 OR1C1Q15619 314 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 SMU1Q2TAY7 513 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 ZNF750Q32MQ0 723 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 C6orf163Q5TEZ5 329 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 IL23RQ5VWK5 629 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 WDR75Q8IWA0 830 aaKnown RBP16.44■□□□□ 0.22
COL7A1-205ENST00000465238 HORMAD2Q8N7B1 307 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 TMEM178AQ8NBL3 297 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 SLC2A12Q8TD20 617 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 ITLN2Q8WWU7 325 aaPredicted RBP16.44■□□□□ 0.22
COL7A1-205ENST00000465238 CCDC120Q96HB5 630 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 EGLN2Q96KS0 407 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 SIGLEC12Q96PQ1 595 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 NPAS2Q99743 824 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 C1orf50Q9BV19 199 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 AKTIPQ9H8T0 292 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 MEAF6Q9HAF1 191 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 SLC35C2Q9NQQ7 365 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 COPS7AQ9UBW8 275 aa16.44■□□□□ 0.22
COL7A1-205ENST00000465238 TRBV11-1A0A0K0K1C0 115 aa16.43■□□□□ 0.22
COL7A1-205ENST00000465238 A0A1W2PS29 197 aa16.43■□□□□ 0.22
COL7A1-205ENST00000465238 NT5EP21589 574 aa16.43■□□□□ 0.22
COL7A1-205ENST00000465238 GPR143P51810 404 aa16.43■□□□□ 0.22
COL7A1-205ENST00000465238 SRSF11Q05519 484 aaKnown RBP16.43■□□□□ 0.22
COL7A1-205ENST00000465238 ZNF267Q14586 743 aaPredicted RBP16.43■□□□□ 0.22
COL7A1-205ENST00000465238 KRTCAP3Q53RY4 240 aa16.43■□□□□ 0.22
COL7A1-205ENST00000465238 RPTNQ6XPR3 784 aa16.43■□□□□ 0.22
COL7A1-205ENST00000465238 DGAT2L6Q6ZPD8 337 aa16.43■□□□□ 0.22
COL7A1-205ENST00000465238 MRGPRGQ86SM5 289 aa16.43■□□□□ 0.22
COL7A1-205ENST00000465238 LIX1Q8N485 282 aa16.43■□□□□ 0.22
COL7A1-205ENST00000465238 KIF2BQ8N4N8 673 aa16.43■□□□□ 0.22
COL7A1-205ENST00000465238 ZNF808Q8N4W9 903 aaPredicted RBP16.43■□□□□ 0.22
COL7A1-205ENST00000465238 APCDD1LQ8NCL9 501 aa16.43■□□□□ 0.22
COL7A1-205ENST00000465238 CLHC1Q8NHS4 586 aa16.43■□□□□ 0.22
COL7A1-205ENST00000465238 THAP3Q8WTV1 239 aaPredicted RBP16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms