RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 LRRC34Q8IZ02 419 aa13.46□□□□□ -0.25
SQSTM1-205ENST00000464493 HORMAD2Q8N7B1 307 aa13.46□□□□□ -0.25
SQSTM1-205ENST00000464493 ZNF615Q8N8J6 731 aa13.46□□□□□ -0.25
SQSTM1-205ENST00000464493 OR9A2Q8NGT5 310 aa13.46□□□□□ -0.25
SQSTM1-205ENST00000464493 ZNF675Q8TD23 568 aa13.46□□□□□ -0.25
SQSTM1-205ENST00000464493 PPCDCQ96CD2 204 aa13.46□□□□□ -0.25
SQSTM1-205ENST00000464493 CTHRC1Q96CG8 243 aa13.46□□□□□ -0.25
SQSTM1-205ENST00000464493 MTERF3Q96E29 417 aa13.46□□□□□ -0.25
SQSTM1-205ENST00000464493 ZNF764Q96H86 408 aaPredicted RBP13.46□□□□□ -0.25
SQSTM1-205ENST00000464493 C7orf26Q96N11 449 aa13.46□□□□□ -0.25
SQSTM1-205ENST00000464493 SIGLEC12Q96PQ1 595 aa13.46□□□□□ -0.25
SQSTM1-205ENST00000464493 EPN3Q9H201 632 aa13.46□□□□□ -0.25
SQSTM1-205ENST00000464493 NOP53Q9NZM5 478 aaKnown RBP13.46□□□□□ -0.25
SQSTM1-205ENST00000464493 SH3BP4Q9P0V3 963 aa13.46□□□□□ -0.25
SQSTM1-205ENST00000464493 LRFN1Q9P244 771 aa13.46□□□□□ -0.25
SQSTM1-205ENST00000464493 ZNF639Q9UID6 485 aa13.46□□□□□ -0.25
SQSTM1-205ENST00000464493 TBX19O60806 448 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 PRAMEF2O60811 474 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 G6PDP11413 515 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 DDX5P17844 614 aaKnown RBP13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 LBPP18428 481 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 NTSP30990 170 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 SOX18P35713 384 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 HPCAL1P37235 193 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 RPL3P39023 403 aaKnown RBP13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 SSR4P51571 173 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 NCBP2P52298 156 aaKnown RBP eCLIP13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 MLLT10P55197 1068 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 PDE7AQ13946 482 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 EBPQ15125 230 aaKnown RBP13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 MPEG1Q2M385 716 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 TRMT12Q53H54 448 aaKnown RBP13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 ZNF628Q5EBL2 1059 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 PIGGQ5H8A4 983 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 ANKRD26P1Q6NSI1 321 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 LARP4Q71RC2 724 aaKnown RBP eCLIP13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 FAM9CQ8IZT9 166 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 CKAP2Q8WWK9 683 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 KAT2AQ92830 837 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 MAGEB18Q96M61 343 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 GAL3ST4Q96RP7 486 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 RASL10BQ96S79 203 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 WWTR1Q9GZV5 400 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 TRIM45Q9H8W5 580 aaPredicted RBP13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 ASIC5Q9NY37 505 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 BCAP29Q9UHQ4 241 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 CFL2Q9Y281 166 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 PCDHGA10Q9Y5H3 936 aa13.45□□□□□ -0.26
SQSTM1-205ENST00000464493 C2orf92A0A1B0GVN3 265 aa13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 SDHDO14521 159 aa13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 BCAS2O75934 225 aaPredicted RBP13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 NEURL1O76050 574 aa13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 CBX7O95931 251 aa13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 CD46P15529 392 aa13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 PCSK2P16519 638 aa13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 PRPS1L1P21108 318 aa13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 EPHA3P29320 983 aa13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 DIO3P55073 304 aa13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 MRPS35P82673 323 aaKnown RBP13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 TLE1Q04724 770 aa13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 EXOSC7Q15024 291 aaKnown RBP13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 ZNF766Q5HY98 468 aa13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 HLA-DQA1Q5Y7H0 255 aa13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 RPUSD3Q6P087 351 aaKnown RBP13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 CISD2Q8N5K1 135 aaKnown RBP13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 MDS2Q8NDY4 140 aa13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 C16orf52Q8NHV5 167 aa13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 ASB15Q8WXK1 588 aa13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 CIDECQ96AQ7 238 aaPredicted RBP13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 ERP27Q96DN0 273 aa13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 AMDHD1Q96NU7 426 aa13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 GLIPR2Q9H4G4 154 aa13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 WDR55Q9H6Y2 383 aaPredicted RBP13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 SLCO1B3Q9NPD5 702 aa13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 MED4Q9NPJ6 270 aa13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 ATP6V1HQ9UI12 483 aa13.44□□□□□ -0.26
SQSTM1-205ENST00000464493 GOLGA8QA0A0J9YX86 632 aa13.43□□□□□ -0.26
SQSTM1-205ENST00000464493 GOLGA8OA6NCC3 632 aa13.43□□□□□ -0.26
SQSTM1-205ENST00000464493 A8MVJ9 347 aa13.43□□□□□ -0.26
SQSTM1-205ENST00000464493 GOLGA8NF8WBI6 632 aa13.43□□□□□ -0.26
SQSTM1-205ENST00000464493 ZNF195O14628 629 aa13.43□□□□□ -0.26
SQSTM1-205ENST00000464493 SCAMP2O15127 329 aaKnown RBP13.43□□□□□ -0.26
SQSTM1-205ENST00000464493 PDPK1O15530 556 aa13.43□□□□□ -0.26
SQSTM1-205ENST00000464493 PLOD3O60568 738 aa13.43□□□□□ -0.26
SQSTM1-205ENST00000464493 SLITRK5O94991 958 aa13.43□□□□□ -0.26
SQSTM1-205ENST00000464493 SOX3P41225 446 aa13.43□□□□□ -0.26
SQSTM1-205ENST00000464493 CLDN8P56748 225 aa13.43□□□□□ -0.26
SQSTM1-205ENST00000464493 DUSP8Q13202 625 aa13.43□□□□□ -0.26
SQSTM1-205ENST00000464493 INPP5JQ15735 1006 aaPredicted RBP13.43□□□□□ -0.26
SQSTM1-205ENST00000464493 ZNF385BQ569K4 471 aa13.43□□□□□ -0.26
SQSTM1-205ENST00000464493 CPTPQ5TA50 214 aa13.43□□□□□ -0.26
SQSTM1-205ENST00000464493 OGFOD2Q6N063 350 aa13.43□□□□□ -0.26
SQSTM1-205ENST00000464493 OPN5Q6U736 354 aa13.43□□□□□ -0.26
SQSTM1-205ENST00000464493 IL20RBQ6UXL0 311 aa13.43□□□□□ -0.26
SQSTM1-205ENST00000464493 ZNF227Q86WZ6 799 aa13.43□□□□□ -0.26
SQSTM1-205ENST00000464493 RIMKLAQ8IXN7 391 aa13.43□□□□□ -0.26
SQSTM1-205ENST00000464493 GPALPP1Q8IXQ4 340 aa13.43□□□□□ -0.26
SQSTM1-205ENST00000464493 SLC15A4Q8N697 577 aa13.43□□□□□ -0.26
SQSTM1-205ENST00000464493 ARFGAP2Q8N6H7 521 aa13.43□□□□□ -0.26
SQSTM1-205ENST00000464493 KRTCAP2Q8N6L1 136 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms