RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 NDRG2Q9UN36 371 aaKnown RBP12.72□□□□□ -0.37
USP40-208ENST00000450966 ELOA3DA6NLF2 546 aaPredicted RBP12.72□□□□□ -0.37
USP40-208ENST00000450966 BTG1P62324 171 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 ELOA3BQ3SY89 546 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 LDLRAD1Q5T700 205 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 TMEM164Q5U3C3 297 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 ZNF676Q8N7Q3 588 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 ELOA3Q8NG57 546 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 TTLQ8NG68 377 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 JOSD2Q8TAC2 188 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 NT5C3BQ969T7 300 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 PCDHGA6Q9Y5G7 932 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 KCPQ6ZWJ8 1503 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 RNF212BA8MTL3 300 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 LRP6O75581 1613 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 C1RP00736 705 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 ENGP17813 658 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 RAB6AP20340 208 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 GJA5P36382 358 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 CLCNKBP51801 687 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 SPOCK1Q08629 439 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 FUT2Q10981 343 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 CCL14Q16627 93 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 CDONQ4KMG0 1287 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 SLC51AQ86UW1 340 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 C4orf32Q8N8J7 132 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 OR10H5Q8NGA6 315 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 ZNF563Q8TA94 476 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 SCGB1C1Q8TD33 95 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 GPR152Q8TDT2 470 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 NTPCRQ9BSD7 190 aaKnown RBP12.72□□□□□ -0.37
USP40-208ENST00000450966 TMPRSS5Q9H3S3 457 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 GPATCH2Q9NW75 528 aa12.72□□□□□ -0.37
USP40-208ENST00000450966 MN1Q10571 1320 aaPredicted RBP12.71□□□□□ -0.37
USP40-208ENST00000450966 IGLV3-22A0A075B6J6 115 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 DNAJB6O75190 326 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 ANXA4P09525 319 aaPredicted RBP12.71□□□□□ -0.37
USP40-208ENST00000450966 ETFAP13804 333 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 HOXA1P49639 335 aaPredicted RBP12.71□□□□□ -0.37
USP40-208ENST00000450966 LBX1P52954 281 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 UFM1P61960 85 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 ARFRP1Q13795 201 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 C12orf29Q8N999 325 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 SMPDL3AQ92484 453 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 CSPG4P5Q96PW8 444 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 PKMYT1Q99640 499 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 DCAF16Q9NXF7 216 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 CYB5R1Q9UHQ9 305 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 SCML2Q9UQR0 700 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 WASH4PA8MWX3 477 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 ACVR2AP27037 513 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 SLC1A3P43003 542 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 FXYD6P3P58550 94 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 TCEAL1Q15170 157 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 GTF2H5Q6ZYL4 71 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 RANBP3LQ86VV4 465 aaPredicted RBP12.71□□□□□ -0.37
USP40-208ENST00000450966 DCUN1D4Q92564 292 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 C16orf58Q96GQ5 468 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 ZNF514Q96K75 400 aaPredicted RBP12.71□□□□□ -0.37
USP40-208ENST00000450966 DUSP26Q9BV47 211 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 PCDHGA5Q9Y5G8 931 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 ZNF98A6NK75 572 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 J3QLW9 94 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 BET1O15155 118 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 IFNA5P01569 189 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 RD3LP0DJH9 198 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 ITGAMP11215 1152 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 ZNF19P17023 458 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 NDUFS1P28331 727 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 ADRA1BP35368 520 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 AQP2P41181 271 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 LILRA4P59901 499 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 SF1Q15637 639 aaKnown RBP12.71□□□□□ -0.37
USP40-208ENST00000450966 ZNF783Q6ZMS7 281 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 LINC00469Q8N7U9 141 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 DTX3Q8N9I9 347 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 OR8S1Q8NH09 359 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 PCBD2Q9H0N5 130 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 MEAF6Q9HAF1 191 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 GPR83Q9NYM4 423 aa12.71□□□□□ -0.37
USP40-208ENST00000450966 EEDO75530 441 aaKnown RBP12.71□□□□□ -0.38
USP40-208ENST00000450966 ACTBP60709 375 aa12.71□□□□□ -0.38
USP40-208ENST00000450966 ACTG1P63261 375 aa12.71□□□□□ -0.38
USP40-208ENST00000450966 ZNF546Q86UE3 836 aa12.71□□□□□ -0.38
USP40-208ENST00000450966 ZNF584Q8IVC4 421 aa12.71□□□□□ -0.38
USP40-208ENST00000450966 SLC38A6Q8IZM9 456 aa12.71□□□□□ -0.38
USP40-208ENST00000450966 DNAJC5GQ8N7S2 189 aa12.71□□□□□ -0.38
USP40-208ENST00000450966 RASGEF1AQ8N9B8 481 aa12.71□□□□□ -0.38
USP40-208ENST00000450966 SYT14Q8NB59 555 aa12.71□□□□□ -0.38
USP40-208ENST00000450966 ZNF680Q8NEM1 530 aa12.71□□□□□ -0.38
USP40-208ENST00000450966 XAGE5Q8WWM1 108 aa12.71□□□□□ -0.38
USP40-208ENST00000450966 USB1Q9BQ65 265 aaKnown RBP12.71□□□□□ -0.38
USP40-208ENST00000450966 FZD4Q9ULV1 537 aa12.71□□□□□ -0.38
USP40-208ENST00000450966 EEF1E1-BLOC1S5C9J1V9 151 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 TRIM77I1YAP6 450 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 J3KR12 359 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 YY2O15391 372 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 ECI2O75521 394 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 TXNDC12O95881 172 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 SLC16A8O95907 504 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms