RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 DNASE1P24855 282 aa8.59□□□□□ -1.03
COPB1-202ENST00000439561 ELAVL4P26378 380 aaKnown RBP8.59□□□□□ -1.03
COPB1-202ENST00000439561 PKLRP30613 574 aa8.59□□□□□ -1.03
COPB1-202ENST00000439561 SLC6A12P48065 614 aa8.59□□□□□ -1.03
COPB1-202ENST00000439561 SRP9P49458 86 aaKnown RBP8.59□□□□□ -1.03
COPB1-202ENST00000439561 RNF144AP50876 292 aaPredicted RBP8.59□□□□□ -1.03
COPB1-202ENST00000439561 LSM11P83369 360 aaKnown RBP eCLIP8.59□□□□□ -1.03
COPB1-202ENST00000439561 ELAVL2Q12926 359 aaKnown RBP8.59□□□□□ -1.03
COPB1-202ENST00000439561 DOC2BQ14184 412 aa8.59□□□□□ -1.03
COPB1-202ENST00000439561 MLIPQ5VWP3 458 aa8.59□□□□□ -1.03
COPB1-202ENST00000439561 ACSM5Q6NUN0 579 aa8.59□□□□□ -1.03
COPB1-202ENST00000439561 BRAT1Q6PJG6 821 aa8.59□□□□□ -1.03
COPB1-202ENST00000439561 CREB3L2Q70SY1 520 aa8.59□□□□□ -1.03
COPB1-202ENST00000439561 C6orf120Q7Z4R8 191 aa8.59□□□□□ -1.03
COPB1-202ENST00000439561 CLDN22Q8N7P3 220 aa8.59□□□□□ -1.03
COPB1-202ENST00000439561 SLC7A13Q8TCU3 470 aa8.59□□□□□ -1.03
COPB1-202ENST00000439561 OR51V1Q9H2C8 321 aa8.59□□□□□ -1.03
COPB1-202ENST00000439561 NIPAL2Q9H841 368 aa8.59□□□□□ -1.03
COPB1-202ENST00000439561 PLEKHB1Q9UF11 243 aaPredicted RBP8.59□□□□□ -1.03
COPB1-202ENST00000439561 CKAP5Q14008 2032 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 CHURC1-FNTBB4DL54 471 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 PAHP00439 452 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 SEMG1P04279 462 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 GIPRP48546 466 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 CTSCP53634 463 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 ARHGEF6Q15052 776 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 TCEA2Q15560 299 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 SYPL1Q16563 259 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 SYT14P1Q58G82 188 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 SLC36A4Q6YBV0 504 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 RASSF6Q6ZTQ3 369 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 USP50Q70EL3 339 aaPredicted RBP8.58□□□□□ -1.04
COPB1-202ENST00000439561 TOMM5Q8N4H5 51 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 CHST14Q8NCH0 376 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 DBF4BQ8NFT6 615 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 GANCQ8TET4 914 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 DNAJA4Q8WW22 397 aaPredicted RBP8.58□□□□□ -1.04
COPB1-202ENST00000439561 COL26A1Q96A83 441 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 ARPC5LQ9BPX5 153 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 QRSL1Q9H0R6 528 aaKnown RBP8.58□□□□□ -1.04
COPB1-202ENST00000439561 CXorf36Q9H7Y0 433 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 SRRDQ9UH36 339 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 CLEC4EQ9ULY5 219 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 POLHQ9Y253 713 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 TSC2P49815 1807 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 TEX13CA0A0J9YWL9 993 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 C1orf226A1L170 272 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 FZD6O60353 706 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 ALPPP05187 535 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 RB1P06400 928 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 FCER2P06734 321 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 MRPL3P09001 348 aaKnown RBP8.58□□□□□ -1.04
COPB1-202ENST00000439561 ARAFP10398 606 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 HLA-DMAP28067 261 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 GABRR2P28476 465 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 ACSL1P33121 698 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 SPINT3P49223 89 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 POLR2LP62875 67 aaKnown RBP8.58□□□□□ -1.04
COPB1-202ENST00000439561 LASP1Q14847 261 aaKnown RBP8.58□□□□□ -1.04
COPB1-202ENST00000439561 SF3A2Q15428 464 aaKnown RBP8.58□□□□□ -1.04
COPB1-202ENST00000439561 PLK5Q496M5 336 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 PLEKHS1Q5SXH7 462 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 LDLRAD1Q5T700 205 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 SLC27A4Q6P1M0 643 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 METTL2BQ6P1Q9 378 aaKnown RBP8.58□□□□□ -1.04
COPB1-202ENST00000439561 KLHL36Q8N4N3 616 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 SLC43A3Q8NBI5 491 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 GALNT6Q8NCL4 622 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 AP2M1Q96CW1 435 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 SCRN2Q96FV2 425 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 ZNF582Q96NG8 517 aaPredicted RBP8.58□□□□□ -1.04
COPB1-202ENST00000439561 F2RL3Q96RI0 385 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 TRMT61BQ9BVS5 477 aaKnown RBP8.58□□□□□ -1.04
COPB1-202ENST00000439561 MTG2Q9H4K7 406 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 RC3H2Q9HBD1 1191 aaKnown RBP8.58□□□□□ -1.04
COPB1-202ENST00000439561 C1GALT1Q9NS00 363 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 THSD1Q9NS62 852 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 GPATCH2Q9NW75 528 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 FKBP14Q9NWM8 211 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 CSNK1G3Q9Y6M4 447 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 HEPACAM2A8MVW5 462 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 NEDD8-MDP1E9PL57 170 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 PROM1O43490 865 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 HRO43593 1189 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 EOMESO95936 686 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 IFNA7P01567 189 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 IGHA2P01877 340 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 ELNP15502 786 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 ZNF250P15622 560 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 CD79BP40259 229 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 ILKQ13418 452 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 SNTA1Q13424 505 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 KRT33BQ14525 404 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 TCTN3Q6NUS6 607 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 PGBD2Q6P3X8 592 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 DNAJB7Q7Z6W7 309 aaPredicted RBP8.58□□□□□ -1.04
COPB1-202ENST00000439561 RTN4RL1Q86UN2 441 aaPredicted RBP8.58□□□□□ -1.04
COPB1-202ENST00000439561 TCTE3Q8IZS6 198 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 PGBD3Q8N328 593 aa8.58□□□□□ -1.04
COPB1-202ENST00000439561 TRPV1Q8NER1 839 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms