RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 CLTCL1P53675 1640 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 TP53I11O14683 189 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 ZNF630Q2M218 657 aaPredicted RBP12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 PNCKQ6P2M8 343 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 HMCESQ96FZ2 354 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 DUSP22Q9NRW4 184 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 CRB1P82279 1406 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 TMEM150BA6NC51 233 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 FAAHO00519 579 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 IMPA1P29218 277 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 Q1RN00 199 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 SAMD7Q7Z3H4 446 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 OR2T27Q8NH04 317 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 WDR26Q9H7D7 661 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 KCNQ5Q9NR82 932 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 HOXD11P31277 338 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 POU3F4P49335 361 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 MEF2DQ14814 521 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 ASRGL1Q7L266 308 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 MMAAQ8IVH4 418 aaKnown RBP12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 GDPD1Q8N9F7 314 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 HPSE2Q8WWQ2 592 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 AKTIPQ9H8T0 292 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 PLEKHJ1Q9NW61 149 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 PPM1HQ9ULR3 514 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 A0A0D9SG52 128 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 SLC31A1O15431 190 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 NSA2O95478 260 aaKnown RBP12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 SDHAF4Q5VUM1 108 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 ZNF572Q7Z3I7 529 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 C15orf54Q8N8G6 183 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 OR56B4Q8NH76 319 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 OR1F2PQ96R84 312 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 DERAQ9Y315 318 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 NAP1L6A6NFF2 107 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 IMPDH1P20839 514 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 TLE4Q04727 773 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 HYAL2Q12891 473 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 ERMP1Q7Z2K6 904 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 NOXA1Q86UR1 476 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 NIPSNAP3BQ9BS92 247 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 SLC29A3Q9BZD2 475 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 PITHD1Q9GZP4 211 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 HRH4Q9H3N8 390 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 CERS4Q9HA82 394 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 ADARB2Q9NS39 739 aaKnown RBP12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 K7EQM0 130 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 TRAF3IP2O43734 574 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 BTN1A1Q13410 526 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 KIAA0319LQ8IZA0 1049 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 RAB39BQ96DA2 213 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 PWWP2AQ96N64 755 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 PTCHD1Q96NR3 888 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 YY2O15391 372 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 TOX4O94842 621 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 CXCL14O95715 111 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 BCKDHBP21953 392 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 BPIFA2Q96DR5 249 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 PIP5K1AQ99755 562 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 PRAF2O60831 178 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 ACVR1BP36896 505 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 GK3PQ14409 553 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 RBMS3Q6XE24 437 aaKnown RBP12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 LRRC52Q8N7C0 313 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 NHLRC2Q8NBF2 726 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 MAGEH1Q9H213 219 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 SLC32A1Q9H598 525 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 IL36AQ9UHA7 158 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 A0A096LPI6 279 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 MEIS2O14770 477 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 GPR143P51810 404 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 LINGO4Q6UY18 593 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 TMEM150AQ86TG1 271 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 OR4C5Q8NGB2 326 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 RNF32Q9H0A6 362 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 SLC22A14Q9Y267 594 aa12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 ZFP37Q9Y6Q3 630 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-204ENST00000413716 FAM237AA0A1B0GTK4 181 aa12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 MATN3O15232 486 aa12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 CBLP22681 906 aa12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 MRPS34P82930 218 aaKnown RBP12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 OR1M1Q8NGA1 313 aa12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 OR9K2Q8NGE7 335 aa12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 OXSMQ9NWU1 459 aa12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 SH3BGRL2Q9UJC5 107 aa12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 ITGB5P18084 799 aa12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 MSMO1Q15800 293 aa12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 ARHGAP11BQ3KRB8 267 aa12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 YIF1BQ5BJH7 314 aa12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 OR6T1Q8NGN1 323 aa12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 TBC1D20Q96BZ9 403 aa12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 UHRF1Q96T88 793 aaPredicted RBP12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 EVLQ9UI08 416 aaPredicted RBP12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 ASB4Q9Y574 426 aa12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 TBX10O75333 385 aa12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 NAA10P41227 235 aaPredicted RBP12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 MAP2K4P45985 399 aa12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 ZNF74Q16587 644 aa12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 HEPHL1Q6MZM0 1159 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms