RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 OR7G2Q8NG99 324 aa16.87■□□□□ 0.29
SDC1-203ENST00000403076 OR56A1Q8NGH5 318 aa16.87■□□□□ 0.29
SDC1-203ENST00000403076 OR14A16Q8NHC5 309 aa16.87■□□□□ 0.29
SDC1-203ENST00000403076 PTPMT1Q8WUK0 201 aaPredicted RBP16.87■□□□□ 0.29
SDC1-203ENST00000403076 MOAP1Q96BY2 351 aa16.87■□□□□ 0.29
SDC1-203ENST00000403076 FAM120BQ96EK7 910 aaKnown RBP16.87■□□□□ 0.29
SDC1-203ENST00000403076 PHF12Q96QT6 1004 aa16.87■□□□□ 0.29
SDC1-203ENST00000403076 LPAR4Q99677 370 aa16.87■□□□□ 0.29
SDC1-203ENST00000403076 HOPXQ9BPY8 73 aaPredicted RBP16.87■□□□□ 0.29
SDC1-203ENST00000403076 EFHD1Q9BUP0 239 aa16.87■□□□□ 0.29
SDC1-203ENST00000403076 IL17BQ9UHF5 180 aa16.87■□□□□ 0.29
SDC1-203ENST00000403076 BCAP29Q9UHQ4 241 aa16.87■□□□□ 0.29
SDC1-203ENST00000403076 MRPS18BQ9Y676 258 aaKnown RBP16.87■□□□□ 0.29
SDC1-203ENST00000403076 EVPLLA8MZ36 301 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 CLIC1O00299 241 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 TERTO14746 1132 aaKnown RBP16.86■□□□□ 0.29
SDC1-203ENST00000403076 GYG2O15488 501 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 KRT75O95678 551 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 MMP11P24347 488 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 PTPN6P29350 595 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 HOXD11P31277 338 aaPredicted RBP16.86■□□□□ 0.29
SDC1-203ENST00000403076 MGAT2Q10469 447 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 GAB1Q13480 694 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 EXOSC7Q15024 291 aaKnown RBP16.86■□□□□ 0.29
SDC1-203ENST00000403076 RUNDC3AQ59EK9 446 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 NANOGP8Q6NSW7 305 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 PAPD4Q6PIY7 484 aaKnown RBP16.86■□□□□ 0.29
SDC1-203ENST00000403076 TMEM64Q6YI46 380 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 C6orf120Q7Z4R8 191 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 MSRB3Q8IXL7 192 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 DEFB107AQ8IZN7 70 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 NUP43Q8NFH3 380 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 SFXN5Q8TD22 340 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 FGF11Q92914 225 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 ART5Q96L15 291 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 ANKRD27Q96NW4 1050 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 THUMPD3Q9BV44 507 aaKnown RBP16.86■□□□□ 0.29
SDC1-203ENST00000403076 TRIM4Q9C037 500 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 OR8D2Q9GZM6 311 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 ANKRA2Q9H9E1 313 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 NANOGQ9H9S0 305 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 TPT1P8Q9HAU6 139 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 TAS2R1Q9NYW7 299 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 SLC25A37Q9NYZ2 338 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 ERVK-19Q9WJR5 959 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 L3MBTL1Q9Y468 752 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 PCDHGA6Q9Y5G7 932 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 A0A087WV62 115 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 C15orf38-AP3S2A0A0A6YYH1 394 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 FXYD1O00168 92 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 PLOD3O60568 738 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 SEC24DO94855 1032 aaPredicted RBP16.86■□□□□ 0.29
SDC1-203ENST00000403076 ADRB1P08588 477 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 PPIBP23284 216 aaKnown RBP16.86■□□□□ 0.29
SDC1-203ENST00000403076 SPRED3Q2MJR0 410 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 LACTB2Q53H82 288 aaPredicted RBP16.86■□□□□ 0.29
SDC1-203ENST00000403076 ARPINQ7Z6K5 226 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 VASH2Q86V25 355 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 PGAM4Q8N0Y7 254 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 PNPT1Q8TCS8 783 aaKnown RBP16.86■□□□□ 0.29
SDC1-203ENST00000403076 ZFP90Q8TF47 636 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 CTHRC1Q96CG8 243 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 SLC7A6OSQ96CW6 309 aaPredicted RBP16.86■□□□□ 0.29
SDC1-203ENST00000403076 SENP5Q96HI0 755 aaPredicted RBP16.86■□□□□ 0.29
SDC1-203ENST00000403076 NAF1Q96HR8 494 aaKnown RBP16.86■□□□□ 0.29
SDC1-203ENST00000403076 VPS50Q96JG6 964 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 SH3GL1Q99961 368 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 MESP1Q9BRJ9 268 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 BTBD10Q9BSF8 475 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 C1orf21Q9H246 121 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 C19orf53Q9UNZ5 99 aaPredicted RBP16.86■□□□□ 0.29
SDC1-203ENST00000403076 HS3ST3B1Q9Y662 390 aa16.86■□□□□ 0.29
SDC1-203ENST00000403076 TRBV5-3A0A0A0MS03 114 aa16.85■□□□□ 0.29
SDC1-203ENST00000403076 HRKO00198 91 aa16.85■□□□□ 0.29
SDC1-203ENST00000403076 UPK1AO00322 258 aa16.85■□□□□ 0.29
SDC1-203ENST00000403076 CREG1O75629 220 aa16.85■□□□□ 0.29
SDC1-203ENST00000403076 BCAS2O75934 225 aaPredicted RBP16.85■□□□□ 0.29
SDC1-203ENST00000403076 LIFP15018 202 aa16.85■□□□□ 0.29
SDC1-203ENST00000403076 SSTR4P31391 388 aa16.85■□□□□ 0.29
SDC1-203ENST00000403076 CPOXP36551 454 aa16.85■□□□□ 0.29
SDC1-203ENST00000403076 NCALDP61601 193 aa16.85■□□□□ 0.29
SDC1-203ENST00000403076 ZNF771Q7L3S4 317 aaPredicted RBP16.85■□□□□ 0.29
SDC1-203ENST00000403076 RAB43Q86YS6 212 aa16.85■□□□□ 0.29
SDC1-203ENST00000403076 OR2L13Q8N349 312 aa16.85■□□□□ 0.29
SDC1-203ENST00000403076 MORN4Q8NDC4 146 aa16.85■□□□□ 0.29
SDC1-203ENST00000403076 SLC2A12Q8TD20 617 aa16.85■□□□□ 0.29
SDC1-203ENST00000403076 FBXL20Q96IG2 436 aa16.85■□□□□ 0.29
SDC1-203ENST00000403076 TMEM121BQ9BXQ6 578 aaPredicted RBP16.85■□□□□ 0.29
SDC1-203ENST00000403076 TRIM8Q9BZR9 551 aa16.85■□□□□ 0.29
SDC1-203ENST00000403076 RAD21L1Q9H4I0 556 aa16.85■□□□□ 0.29
SDC1-203ENST00000403076 EQTNQ9NQ60 294 aa16.85■□□□□ 0.29
SDC1-203ENST00000403076 ADA2Q9NZK5 511 aa16.85■□□□□ 0.29
SDC1-203ENST00000403076 COPS7AQ9UBW8 275 aa16.85■□□□□ 0.29
SDC1-203ENST00000403076 LOC102723996A0A087X1L8 192 aa16.84■□□□□ 0.29
SDC1-203ENST00000403076 SAGE2PA6NJ88 616 aa16.84■□□□□ 0.29
SDC1-203ENST00000403076 COQ9O75208 318 aa16.84■□□□□ 0.29
SDC1-203ENST00000403076 IFI6P09912 130 aa16.84■□□□□ 0.29
SDC1-203ENST00000403076 HOXB9P17482 250 aaPredicted RBP16.84■□□□□ 0.29
SDC1-203ENST00000403076 SLC6A2P23975 617 aa16.84■□□□□ 0.29
SDC1-203ENST00000403076 CASP9P55211 416 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms