RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 PTGFRNQ9P2B2 879 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 C3orf18Q9UK00 162 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 FAF1Q9UNN5 650 aaPredicted RBP13.31□□□□□ -0.28
SKA1-202ENST00000398452 CLCA3PQ9Y6N3 262 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 SPTBP11277 2137 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 PKD1L2Q7Z442 2459 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 MYOCOSA0A1B0GUC4 107 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 C3orf80F5H4A9 247 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 STMND1H3BQB6 276 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 FXYD1O00168 92 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 TAF4O00268 1085 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 PCDH17O14917 1159 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 GSTA4O15217 222 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 BRINP1O60477 761 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 IGHEP01854 428 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 NQO1P15559 274 aaKnown RBP13.3□□□□□ -0.28
SKA1-202ENST00000398452 ME2P23368 584 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 GALNSP34059 522 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 FOLR3P41439 243 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 MC3RP41968 323 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 CRATP43155 626 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 PRIM2P49643 509 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 CDK9P50750 372 aaKnown RBP13.3□□□□□ -0.28
SKA1-202ENST00000398452 OR4D2P58180 307 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 TXNL4AP83876 142 aaKnown RBP13.3□□□□□ -0.28
SKA1-202ENST00000398452 VAC14Q08AM6 782 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 NCF4Q15080 339 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 GTDC1Q4AE62 458 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 ZNF385CQ66K41 422 aaPredicted RBP13.3□□□□□ -0.28
SKA1-202ENST00000398452 SHISA6Q6ZSJ9 500 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 IFNEQ86WN2 208 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 FBXW8Q8N3Y1 598 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 NUP43Q8NFH3 380 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 ADCY4Q8NFM4 1077 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 SUN3Q8TAQ9 357 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 ZNF675Q8TD23 568 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 ZFP90Q8TF47 636 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 DAZLQ92904 295 aaKnown RBP13.3□□□□□ -0.28
SKA1-202ENST00000398452 PMEPA1Q969W9 287 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 PPWD1Q96BP3 646 aaKnown RBP13.3□□□□□ -0.28
SKA1-202ENST00000398452 ELP4Q96EB1 424 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 SLC35G5Q96KT7 338 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 KCTD14Q9BQ13 255 aaPredicted RBP13.3□□□□□ -0.28
SKA1-202ENST00000398452 GPATCH1Q9BRR8 931 aaKnown RBP13.3□□□□□ -0.28
SKA1-202ENST00000398452 CNPPD1Q9BV87 410 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 VN1R1Q9GZP7 353 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 ADAP2Q9NPF8 381 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 THUMPD1Q9NXG2 353 aaKnown RBP13.3□□□□□ -0.28
SKA1-202ENST00000398452 PTRH2Q9Y3E5 179 aaKnown RBP13.3□□□□□ -0.28
SKA1-202ENST00000398452 AK5Q9Y6K8 562 aa13.3□□□□□ -0.28
SKA1-202ENST00000398452 APC2O95996 2303 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 PTPRBP23467 1997 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 A0A087WV62 115 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 IDSB3KWA1 339 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 C9orf172C9J069 976 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 PLOD2O00469 737 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 RAD1O60671 282 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 ALOX12BO75342 701 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 DLGAP3O95886 979 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 IFI6P09912 130 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 TCN2P20062 427 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 MAGEA8P43361 318 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 PGDP52209 483 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 IGLV3-21P80748 117 aaPredicted RBP13.29□□□□□ -0.28
SKA1-202ENST00000398452 RHAGQ02094 409 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 LIPEQ05469 1076 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 FADDQ13158 208 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 ZNF267Q14586 743 aaPredicted RBP13.29□□□□□ -0.28
SKA1-202ENST00000398452 ZNHIT3Q15649 155 aaPredicted RBP13.29□□□□□ -0.28
SKA1-202ENST00000398452 ELAVL1Q15717 326 aaKnown RBP13.29□□□□□ -0.28
SKA1-202ENST00000398452 LTB4RQ15722 352 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 RABL3Q5HYI8 236 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 FAAH2Q6GMR7 532 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 MRPL14Q6P1L8 145 aaKnown RBP13.29□□□□□ -0.28
SKA1-202ENST00000398452 FAM199XQ6PEV8 388 aaPredicted RBP13.29□□□□□ -0.28
SKA1-202ENST00000398452 C6orf120Q7Z4R8 191 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 TMEM151BQ8IW70 566 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 SLC15A3Q8IY34 581 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 ULK2Q8IYT8 1036 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 VWA5B2Q8N398 1253 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 OR52N2Q8NGI0 321 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 OR14A16Q8NHC5 309 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 PSMA8Q8TAA3 256 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 PNPT1Q8TCS8 783 aaKnown RBP13.29□□□□□ -0.28
SKA1-202ENST00000398452 KAT2AQ92830 837 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 TMEM125Q96AQ2 219 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 KIAA1143Q96AT1 154 aaPredicted RBP13.29□□□□□ -0.28
SKA1-202ENST00000398452 AURKBQ96GD4 344 aaPredicted RBP13.29□□□□□ -0.28
SKA1-202ENST00000398452 MS4A4EQ96PG1 132 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 SPATA9Q9BWV2 254 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 TRIM15Q9C019 465 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 FAM117AQ9C073 453 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 ALG2Q9H553 416 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 CCDC86Q9H6F5 360 aaKnown RBP13.29□□□□□ -0.28
SKA1-202ENST00000398452 NECTIN3Q9NQS3 549 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 THSD1Q9NS62 852 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 SLC22A11Q9NSA0 550 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 SLC25A37Q9NYZ2 338 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 FOXJ2Q9P0K8 574 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 TMEM181Q9P2C4 612 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms