RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 AIREO43918 545 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 ACP5P13686 325 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 CD6P30203 668 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 OPRD1P41143 372 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 NUDT6P53370 316 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 PCBP3P57721 371 aaKnown RBP9.14□□□□□ -0.95
COL6A3-204ENST00000392003 SMIM11AP58511 58 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 NCS1P62166 190 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 RPS26P62854 115 aaKnown RBP9.14□□□□□ -0.95
COL6A3-204ENST00000392003 EEF1A2Q05639 463 aaKnown RBP9.14□□□□□ -0.95
COL6A3-204ENST00000392003 DBPQ10586 325 aaPredicted RBP9.14□□□□□ -0.95
COL6A3-204ENST00000392003 GRM7Q14831 915 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TBCEQ15813 527 aaPredicted RBP9.14□□□□□ -0.95
COL6A3-204ENST00000392003 CST6Q15828 149 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TIGD6Q17RP2 521 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 ANKRD54Q6NXT1 300 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TSEN54Q7Z6J9 526 aaKnown RBP9.14□□□□□ -0.95
COL6A3-204ENST00000392003 KRT73Q86Y46 540 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 COL21A1Q96P44 957 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 NIPSNAP1Q9BPW8 284 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 NT5DC2Q9H857 520 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 ACER3Q9NUN7 267 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 IMP3Q9NV31 184 aaKnown RBP9.14□□□□□ -0.95
COL6A3-204ENST00000392003 RLIMQ9NVW2 624 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 ANKMY1Q9P2S6 941 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TBC1D3DA0A087WVF3 549 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TBC1D3IA0A087WXS9 549 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TBC1D3EA0A087X179 549 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TBC1D3KA0A087X1G2 549 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 A0A0G2JMP0 313 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TBC1D3FA6NER0 549 aaPredicted RBP9.14□□□□□ -0.95
COL6A3-204ENST00000392003 ANTXRLA6NF34 631 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 CCDC85CA6NKD9 419 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 CLDN24A6NM45 220 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TMEM229AB2RXF0 380 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 GPR89AB7ZAQ6 455 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TBC1D3LB9A6J9 549 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 PCDH17O14917 1159 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 SLC28A2O43868 658 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TBX19O60806 448 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 DNTTP04053 509 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 CDK1P06493 297 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TBC1D3HP0C7X1 549 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 GPR89BP0CG08 455 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 HSMCR30P0CW71 290 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 PSMB5P28074 263 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 MAT2AP31153 395 aaKnown RBP9.14□□□□□ -0.95
COL6A3-204ENST00000392003 CCT3P49368 545 aaKnown RBP9.14□□□□□ -0.95
COL6A3-204ENST00000392003 ANXA11P50995 505 aaKnown RBP9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TEKQ02763 1124 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 ZNF124Q15973 351 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 GAB4Q2WGN9 574 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 FBXO43Q4G163 708 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 COLEC12Q5KU26 742 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 PIP5KL1Q5T9C9 394 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TBC1D3GQ6DHY5 549 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TBC1D3CQ6IPX1 549 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 PTCHD4Q6ZW05 846 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TBC1D3Q8IZP1 549 aaPredicted RBP9.14□□□□□ -0.95
COL6A3-204ENST00000392003 HORMAD2Q8N7B1 307 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 FANK1Q8TC84 345 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 APH1BQ8WW43 257 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 RAB8BQ92930 207 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TMEM19Q96HH6 336 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 BBS4Q96RK4 519 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 SECISBP2Q96T21 854 aaKnown RBP9.14□□□□□ -0.95
COL6A3-204ENST00000392003 PLA2G2FQ9BZM2 168 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TINAGL1Q9GZM7 467 aaPredicted RBP9.14□□□□□ -0.95
COL6A3-204ENST00000392003 PLSCR3Q9NRY6 295 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TM7SF3Q9NS93 570 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TMEM184CQ9NVA4 438 aa9.14□□□□□ -0.95
COL6A3-204ENST00000392003 TCF20Q9UGU0 1960 aaKnown RBP9.14□□□□□ -0.95
COL6A3-204ENST00000392003 NUMA1Q14980 2115 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 YKT6O15498 198 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 IFI30P13284 250 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 NTSP30990 170 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 BSGP35613 385 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 PXNP49023 591 aaPredicted RBP9.13□□□□□ -0.95
COL6A3-204ENST00000392003 OLR1P78380 273 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 OXA1LQ15070 435 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 LRIT3Q3SXY7 679 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 DCST1Q5T197 706 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 SAXO2Q658L1 398 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 SYCE2Q6PIF2 218 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 MCFD2Q8NI22 146 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 C9orf43Q8TAL5 461 aaPredicted RBP9.13□□□□□ -0.95
COL6A3-204ENST00000392003 GGHQ92820 318 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 CRELD1Q96HD1 420 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 DACH2Q96NX9 599 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 TEFMQ96QE5 360 aaKnown RBP9.13□□□□□ -0.95
COL6A3-204ENST00000392003 RAB11FIP5Q9BXF6 653 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 A4GALTQ9NPC4 353 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 FBXL12Q9NXK8 326 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 RHCGQ9UBD6 479 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 SEC14L3Q9UDX4 400 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 ADAM29Q9UKF5 820 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 KNL1Q8NG31 2342 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 EFCAB10A6NFE3 127 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 PDZK1P1A8MUH7 402 aa9.13□□□□□ -0.95
COL6A3-204ENST00000392003 IDH3BO43837 385 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms