RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 EPS8L2Q9H6S3 715 aa17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 IL1RAPQ9NPH3 570 aa17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 ADPRHL2Q9NX46 363 aa17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 RAPGEFL1Q9UHV5 662 aa17.13■□□□□ 0.33
CCDC88C-203ENST00000389856 NUP214P35658 2090 aaPredicted RBP17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 C5orf58C9J3I9 102 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 SLC16A6O15403 523 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 EMC8O43402 210 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 TNFRSF21O75509 655 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 SEC24DO94855 1032 aaPredicted RBP17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 CPNE6O95741 557 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 IFI6P09912 130 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 ITGAMP11215 1152 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 SLC5A2P31639 672 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 KDELR2P33947 212 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 KHKP50053 298 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 MAPK10P53779 464 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 CDH15P55291 814 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 NUP107P57740 925 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 DAB2P98082 770 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 TUBA3CQ13748 450 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 BROXQ5VW32 411 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 ZC3H14Q6PJT7 736 aaKnown RBP17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 USP53Q70EK8 1073 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 DGLUCYQ7Z3D6 616 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 PTOV1Q86YD1 416 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 ZDHHC21Q8IVQ6 265 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 GPR135Q8IZ08 494 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 OFCC1Q8IZS5 231 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 D2HGDHQ8N465 521 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 KLHL6Q8WZ60 621 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 MVB12AQ96EY5 273 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 CNRIP1Q96F85 164 aaPredicted RBP17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 MAGED4Q96JG8 741 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 MUS81Q96NY9 551 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 STARD5Q9NSY2 213 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 SIRT3Q9NTG7 399 aaPredicted RBP17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 ZCCHC3Q9NUD5 404 aaKnown RBP17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 ACSL6Q9UKU0 697 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 BAG5Q9UL15 447 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 MRPS2Q9Y399 296 aaKnown RBP17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 HSPE1-MOB4S4R3N1 261 aa17.12■□□□□ 0.33
CCDC88C-203ENST00000389856 ZNF860A6NHJ4 632 aa17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 H0YIG0 161 aa17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 KHNYNO15037 678 aaKnown RBP17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 DNAJB5O75953 348 aa17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 OR2B3O76000 313 aa17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 SEMG1P04279 462 aa17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 ZNF883P0CG24 379 aa17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 ETFAP13804 333 aa17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 FEN1P39748 380 aaKnown RBP17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 XKP51811 444 aa17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 MVDP53602 400 aa17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 TP53BP2Q13625 1128 aa17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 CEACAM20Q6UY09 585 aa17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 CBLL1Q75N03 491 aa17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 SZRD1Q7Z422 152 aa17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 CCDC116Q8IYX3 515 aa17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 EID2Q8N6I1 236 aa17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 SLC41A2Q96JW4 573 aa17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 C10orf90Q96M02 699 aa17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 ZNF681Q96N22 645 aa17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 SERTAD3Q9UJW9 196 aa17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 CDC14AQ9UNH5 594 aa17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 SDK1Q7Z5N4 2213 aa17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 CUL9Q8IWT3 2517 aa17.11■□□□□ 0.33
CCDC88C-203ENST00000389856 SGK494L7N484 410 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 UGT2B11O75310 529 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 PRKRAO75569 313 aaKnown RBP17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 ANKRD34CP0C6C1 535 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 CPMP14384 443 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 PORP16435 677 aaPredicted RBP17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 RYKP34925 604 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 MPLP40238 635 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 TPD52P55327 224 aaPredicted RBP17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 SHC2P98077 582 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 CDK6Q00534 326 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 SCARB2Q14108 478 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 LRRC23Q53EV4 343 aaPredicted RBP17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 OR2T5Q6IEZ7 315 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 FAM180BQ6P0A1 224 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 C10orf111Q8N326 155 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 ARHGEF39Q8N4T4 335 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 SETD9Q8NE22 299 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 OR9A4Q8NGU2 314 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 OR2T29Q8NH02 315 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 LZICQ8WZA0 190 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 DOK1Q99704 481 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 GTPBP2Q9BX10 602 aaKnown RBP17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 ZNF768Q9H5H4 540 aaKnown RBP17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 A4GALTQ9NPC4 353 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 PCDHGB2Q9Y5G2 931 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 PCDH15Q96QU1 1955 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 SCN3AQ9NY46 2000 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 CLDN4O14493 209 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 RDH16O75452 317 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 PDE9AO76083 593 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 GPR75O95800 540 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 FABP3P05413 133 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 ARAFP10398 606 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms