RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 CNKSR3Q6P9H4 555 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 UBE2Q1Q7Z7E8 422 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 TMEM25Q86YD3 366 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 TMC8Q8IU68 726 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 C7orf61Q8IZ16 206 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 NLGN4XQ8N0W4 816 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 TTLQ8NG68 377 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 CEP76Q8TAP6 659 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 ZDHHC1Q8WTX9 485 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 IRF7Q92985 503 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 LRRN3Q9H3W5 708 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 EGLN3Q9H6Z9 239 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 PGAP2Q9UHJ9 254 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 ZNF879B4DU55 563 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 RNASET2O00584 256 aaKnown RBP6.23□□□□□ -1.41
SMC1A-202ENST00000375340 ACADLP28330 430 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 ADARB1P78563 741 aaKnown RBP6.23□□□□□ -1.41
SMC1A-202ENST00000375340 FADDQ13158 208 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 GRIN2CQ14957 1233 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 TBC1D25Q3MII6 688 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 SLC25A25Q6KCM7 469 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 TMED4Q7Z7H5 227 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 LINC01465Q8N7H1 131 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 THEM6Q8WUY1 208 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 KLF16Q9BXK1 252 aaPredicted RBP6.23□□□□□ -1.41
SMC1A-202ENST00000375340 RC3H2Q9HBD1 1191 aaKnown RBP6.23□□□□□ -1.41
SMC1A-202ENST00000375340 ZNF334Q9HCZ1 680 aaPredicted RBP6.23□□□□□ -1.41
SMC1A-202ENST00000375340 SPHK2Q9NRA0 654 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 ARNTLO00327 626 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 C6P13671 934 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 GMFBP60983 142 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 SKP1P63208 163 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 DLEU7Q6UYE1 221 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 Q6ZNX1 250 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 ZNF227Q86WZ6 799 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 MMP21Q8N119 569 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 SETD6Q8TBK2 473 aa6.23□□□□□ -1.41
SMC1A-202ENST00000375340 NPIPA5A0A0B4J1W7 369 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 ZSCAN5BA6NJL1 495 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 NPIPA7E9PJI5 369 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 PRKRAO75569 313 aaKnown RBP6.22□□□□□ -1.41
SMC1A-202ENST00000375340 NPIPA8P0DM63 369 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 BMP8BP34820 402 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 GRK6P43250 576 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 PDGFRLQ15198 375 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 MINDY4Q4G0A6 757 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 HES5Q5TA89 166 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 MSANTD1Q6ZTZ1 278 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 BMP8AQ7Z5Y6 402 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 OR52P1PQ8NH57 321 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 PXYLP1Q8TE99 480 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 CNDP2Q96KP4 475 aaKnown RBP6.22□□□□□ -1.41
SMC1A-202ENST00000375340 CAPNS2Q96L46 248 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 BTBD1Q9H0C5 482 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 MBD2Q9UBB5 411 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 OR7A10O76100 309 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 ADORA3P0DMS8 318 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 OSMP13725 252 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 PRAMEF17Q5VTA0 474 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 XKRXQ6PP77 449 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 Q6ZSR9 355 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 PEG10Q86TG7 708 aaKnown RBP6.22□□□□□ -1.41
SMC1A-202ENST00000375340 HORMAD2Q8N7B1 307 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 SPRYD4Q8WW59 207 aaPredicted RBP6.22□□□□□ -1.41
SMC1A-202ENST00000375340 SMPDL3AQ92484 453 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 ZNF689Q96CS4 500 aaPredicted RBP6.22□□□□□ -1.41
SMC1A-202ENST00000375340 RBM18Q96H35 190 aaKnown RBP6.22□□□□□ -1.41
SMC1A-202ENST00000375340 NLGN3Q9NZ94 848 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 CXXC1Q9P0U4 656 aaPredicted RBP6.22□□□□□ -1.41
SMC1A-202ENST00000375340 UBQLN2Q9UHD9 624 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 PPT2Q9UMR5 302 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 LOC102723532A0A0G2JNH3 316 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 C5orf51A6NDU8 294 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 AQP9O43315 295 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 B4GALT2O60909 372 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 IFNA6P05013 189 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 GKN3PP0CG01 181 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 HNRNPFP52597 415 aaKnown RBP6.22□□□□□ -1.41
SMC1A-202ENST00000375340 CTSCP53634 463 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 UGT3A2Q3SY77 523 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 C6orf132Q5T0Z8 1188 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 OR2T33Q8NG76 320 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 C1orf216Q8TAB5 229 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 FKBP10Q96AY3 582 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 RHNO1Q9BSD3 238 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 NTMT1Q9BV86 223 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 DPEP2Q9H4A9 486 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 IL17CQ9P0M4 197 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 CSO75390 466 aaKnown RBP6.22□□□□□ -1.41
SMC1A-202ENST00000375340 MT-ND4P03905 459 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 GABRA3P34903 492 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 SOX2P48431 317 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 RGS6P49758 472 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 NDUFA9Q16795 377 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 OLIG3Q7RTU3 272 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 CCDC28AQ8IWP9 274 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 NRMQ8IXM6 262 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 OR56A3Q8NH54 315 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 SUN3Q8TAQ9 357 aa6.22□□□□□ -1.41
SMC1A-202ENST00000375340 MSLNLQ96KJ4 702 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms