RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 NEK6Q9HC98 313 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 IL1RAPQ9NPH3 570 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 PAK1IP1Q9NWT1 392 aaPredicted RBP13.5□□□□□ -0.25
HMGA1-203ENST00000374116 DLL3Q9NYJ7 618 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 ATP6V1HQ9UI12 483 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 ICKQ9UPZ9 632 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 PCDHGB1Q9Y5G3 927 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 ORC6Q9Y5N6 252 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 ASPMQ8IZT6 3477 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 GNG14A0A1W2PPG7 69 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 OR6C74A6NCV1 312 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 RFPL3O75679 317 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 UBXN7O94888 489 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 ALX3O95076 343 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 PTTG1O95997 202 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 HOXB3P14651 431 aaPredicted RBP13.49□□□□□ -0.25
HMGA1-203ENST00000374116 CD1CP29017 333 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 KDELR2P33947 212 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 SHMT2P34897 504 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 YAP1P46937 504 aaKnown RBP13.49□□□□□ -0.25
HMGA1-203ENST00000374116 DNASE1L3Q13609 305 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 SLBPQ14493 270 aaKnown RBP eCLIP13.49□□□□□ -0.25
HMGA1-203ENST00000374116 SF1Q15637 639 aaKnown RBP13.49□□□□□ -0.25
HMGA1-203ENST00000374116 ZNF181Q2M3W8 571 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 HKDC1Q2TB90 917 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 SNAP47Q5SQN1 464 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 NXPE4Q6UWF7 544 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 TMEM179BQ7Z7N9 219 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 PTOV1Q86YD1 416 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 DCUN1D3Q8IWE4 304 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 FAM20CQ8IXL6 584 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 SLC5A11Q8WWX8 675 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 LCN9Q8WX39 176 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 NAT6Q93015 286 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 UBE2E3Q969T4 207 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 RAD51AP1Q96B01 352 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 CLIP3Q96DZ5 547 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 AHCYL2Q96HN2 611 aaKnown RBP13.49□□□□□ -0.25
HMGA1-203ENST00000374116 BTBD2Q9BX70 525 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 BHLHE41Q9C0J9 482 aaPredicted RBP13.49□□□□□ -0.25
HMGA1-203ENST00000374116 GABARAPL1Q9H0R8 117 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 MVB12BQ9H7P6 319 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 VPS4AQ9UN37 437 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 HEBP2Q9Y5Z4 205 aa13.49□□□□□ -0.25
HMGA1-203ENST00000374116 C1orf226A1L170 272 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 PIPSLA2A3N6 862 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 BTN3A3O00478 584 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 RNASET2O00584 256 aaKnown RBP13.48□□□□□ -0.25
HMGA1-203ENST00000374116 HS6ST1O60243 411 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 SEMG1P04279 462 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 ABCB1P08183 1280 aaPredicted RBP13.48□□□□□ -0.25
HMGA1-203ENST00000374116 POLR2CP19387 275 aaPredicted RBP13.48□□□□□ -0.25
HMGA1-203ENST00000374116 EEF1B2P24534 225 aaKnown RBP13.48□□□□□ -0.25
HMGA1-203ENST00000374116 CSF2RBP32927 897 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 RPL3P39023 403 aaKnown RBP13.48□□□□□ -0.25
HMGA1-203ENST00000374116 CASP3P42574 277 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 ARHGDIAP52565 204 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 MAPK10P53779 464 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 GFERP55789 205 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 ZNF763Q0D2J5 394 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 IL18R1Q13478 541 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 TSTA3Q13630 321 aaPredicted RBP13.48□□□□□ -0.25
HMGA1-203ENST00000374116 ARHGAP19Q14CB8 494 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 LCTLQ6UWM7 567 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 CBLL1Q75N03 491 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 EIF3MQ7L2H7 374 aaKnown RBP13.48□□□□□ -0.25
HMGA1-203ENST00000374116 PIWIL3Q7Z3Z3 882 aaKnown RBP13.48□□□□□ -0.25
HMGA1-203ENST00000374116 R3HCC1LQ7Z5L2 792 aaKnown RBP13.48□□□□□ -0.25
HMGA1-203ENST00000374116 GLRX5Q86SX6 157 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 HS3ST5Q8IZT8 346 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.48□□□□□ -0.25
HMGA1-203ENST00000374116 AMBRA1Q9C0C7 1298 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 LRRN3Q9H3W5 708 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 SRMSQ9H3Y6 488 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 MARCH7Q9H992 704 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 DMRT3Q9NQL9 472 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 CCDC177Q9NQR7 707 aaPredicted RBP13.48□□□□□ -0.25
HMGA1-203ENST00000374116 ZNF282Q9UDV7 671 aaPredicted RBP13.48□□□□□ -0.25
HMGA1-203ENST00000374116 NUP214P35658 2090 aaPredicted RBP13.48□□□□□ -0.25
HMGA1-203ENST00000374116 A8MU76 341 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 UPK1BO75841 260 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 ACVR2AP27037 513 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 ELK4P28324 431 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 PIK3CBP42338 1070 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 TPD52P55327 224 aaPredicted RBP13.48□□□□□ -0.25
HMGA1-203ENST00000374116 INSM1Q01101 510 aaPredicted RBP13.48□□□□□ -0.25
HMGA1-203ENST00000374116 C19orf57Q0VDD7 668 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 KCNAB2Q13303 367 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 OR2T5Q6IEZ7 315 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 B3GNT8Q7Z7M8 397 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 FAM129CQ86XR2 697 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 LINC01555Q8NAE3 123 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 SIMC1Q8NDZ2 872 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 OR2T29Q8NH02 315 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 RHOXF1Q8NHV9 184 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 ASPSCR1Q9BZE9 553 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 CHST8Q9H2A9 424 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 SPNS1Q9H2V7 528 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 REEP4Q9H6H4 257 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 SPHK1Q9NYA1 384 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms