RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 LRRC25Q8N386 305 aaPredicted RBP10.91□□□□□ -0.66
PTPRF-203ENST00000372407 THAP4Q8WY91 577 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 GATA6Q92908 595 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 GAL3ST3Q96A11 431 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 ITPKCQ96DU7 683 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 TMEM19Q96HH6 336 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 FOLH1BQ9HBA9 442 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 B3GAT2Q9NPZ5 323 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 GPRC5BQ9NZH0 403 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 C19orf25Q9UFG5 118 aaPredicted RBP10.91□□□□□ -0.66
PTPRF-203ENST00000372407 BRWD1Q9NSI6 2320 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 DNAJC25-GNG10A0A024R161 153 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 GRXCR2A6NFK2 248 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 HSPA12AO43301 675 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 SCGB1D2O95969 90 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 CFIP05156 583 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 SPARCP09486 303 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 SRCP12931 536 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 GTF2F2P13984 249 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 S100A2P29034 98 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 CNR2P34972 360 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 RBMXP38159 391 aaKnown RBP10.91□□□□□ -0.66
PTPRF-203ENST00000372407 GTDC1Q4AE62 458 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 PAGE3Q5JUK9 113 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 COMMD6Q7Z4G1 85 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 CCDC28AQ8IWP9 274 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 WDR92Q96MX6 357 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 SORT1Q99523 831 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 DHRS4Q9BTZ2 278 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 HDHD5Q9BXW7 423 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 GPR83Q9NYM4 423 aa10.91□□□□□ -0.66
PTPRF-203ENST00000372407 TRBV2A0A0J9YWF9 115 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 MEIS3P2A8K0S8 358 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 A8MU76 341 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 H7C2Y5 167 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 SLC16A8O95907 504 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 CSF2RAP15509 400 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 SUOXP51687 545 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 VSX2P58304 361 aaPredicted RBP10.9□□□□□ -0.66
PTPRF-203ENST00000372407 RTP2Q5QGT7 225 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 MANEALQ5VSG8 457 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 KIAA0319Q5VV43 1072 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 LETMD1Q6P1Q0 360 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 BAIAP2L2Q6UXY1 529 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 OR5M3Q8NGP4 307 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 TMEM40Q8WWA1 233 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 TMEM125Q96AQ2 219 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 PTERQ96BW5 349 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 CCDC32Q9BV29 185 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 OR2B2Q9GZK3 357 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 WDR6Q9NNW5 1121 aaKnown RBP10.9□□□□□ -0.66
PTPRF-203ENST00000372407 ERVK13-1Q9NX77 482 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 PRELID1Q9Y255 219 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 MYH1P12882 1939 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 MITFO75030 526 aaPredicted RBP10.9□□□□□ -0.66
PTPRF-203ENST00000372407 GNAO1P09471 354 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 IL7P13232 177 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 RNH1P13489 461 aaKnown RBP10.9□□□□□ -0.66
PTPRF-203ENST00000372407 AK4P27144 223 aaPredicted RBP10.9□□□□□ -0.66
PTPRF-203ENST00000372407 ACVR1BP36896 505 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 INHBCP55103 352 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 HERV-K104P61576 105 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 UGT2A3Q6UWM9 527 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 LRRN1Q6UXK5 716 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 GDPGP1Q6ZNW5 385 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 FAM43BQ6ZT52 329 aaPredicted RBP10.9□□□□□ -0.66
PTPRF-203ENST00000372407 ZNF551Q7Z340 670 aaPredicted RBP10.9□□□□□ -0.66
PTPRF-203ENST00000372407 TMPRSS12Q86WS5 348 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 RASGRP3Q8IV61 690 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 TIGD4Q8IY51 512 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 FRS2Q8WU20 508 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 BADQ92934 168 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 ECHDC3Q96DC8 303 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 BOCQ9BWV1 1114 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 CPNE5Q9HCH3 593 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 PAQR5Q9NXK6 330 aaPredicted RBP10.9□□□□□ -0.66
PTPRF-203ENST00000372407 RABL2AQ9UBK7 228 aaPredicted RBP10.9□□□□□ -0.66
PTPRF-203ENST00000372407 RABL2BQ9UNT1 228 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 SPO11Q9Y5K1 396 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 PAPPAQ13219 1627 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 SMAD9O15198 467 aaKnown RBP10.9□□□□□ -0.66
PTPRF-203ENST00000372407 RP2O75695 350 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 FRKP42685 505 aaPredicted RBP10.9□□□□□ -0.66
PTPRF-203ENST00000372407 ZNF41P51814 821 aaPredicted RBP10.9□□□□□ -0.66
PTPRF-203ENST00000372407 POU4F2Q12837 409 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.9□□□□□ -0.66
PTPRF-203ENST00000372407 LSM14AQ8ND56 463 aaKnown RBP10.9□□□□□ -0.66
PTPRF-203ENST00000372407 STOML3Q8TAV4 291 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 LMX1AQ8TE12 382 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 GATAD2BQ8WXI9 593 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 ITFG2Q969R8 447 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 SGTBQ96EQ0 304 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 RBCK1Q9BYM8 510 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 KCNK12Q9HB15 430 aa10.9□□□□□ -0.66
PTPRF-203ENST00000372407 ADAMTS7Q9UKP4 1686 aa10.9□□□□□ -0.67
PTPRF-203ENST00000372407 A0A1W2PP55 124 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 A0A1W2PPK0 400 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 C11orf98E9PRG8 122 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 M0R036 132 aa10.89□□□□□ -0.67
PTPRF-203ENST00000372407 ZNF701M0R085 212 aaPredicted RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms