RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 ERVK-8P63133 956 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 SIRPAP78324 504 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 TBL3Q12788 808 aaKnown RBP7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 SP140Q13342 867 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 GAB1Q13480 694 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 RBM20Q5T481 1227 aaKnown RBP7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 CAND1Q86VP6 1230 aaKnown RBP7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 PRR22Q8IZ63 422 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 TBC1D19Q8N5T2 526 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 OR2L5Q8NG80 312 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 RDH11Q8TC12 318 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 CCT6BQ92526 530 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 FIG4Q92562 907 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 PLPPR2Q96GM1 343 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 FBXL20Q96IG2 436 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 F2RL3Q96RI0 385 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 AIF1LQ9BQI0 150 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 ERVK-6Q9BXR3 956 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 LACRTQ9GZZ8 138 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 GALNT9Q9HCQ5 603 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 SERHLQ9NQF3 203 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 TMEM160Q9NX00 188 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 WWOXQ9NZC7 414 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 BFARQ9NZS9 450 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 ZNF490Q9ULM2 529 aaPredicted RBP7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 MAPRE3Q9UPY8 281 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 ERVK-19Q9WJR5 959 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 LIPT1Q9Y234 373 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 SLC22A14Q9Y267 594 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 MRPS33Q9Y291 106 aaKnown RBP7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 REXO2Q9Y3B8 237 aaKnown RBP7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 BTNL10A8MVZ5 291 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 TMCC2O75069 709 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 SNX4O95219 450 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 ZNF708P17019 499 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 ZNF16P17020 682 aaPredicted RBP7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 GDF5P43026 501 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 MASP1P48740 699 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 MTTPP55157 894 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 ZNF844Q08AG5 666 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 SERTAD2Q14140 314 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 SLBPQ14493 270 aaKnown RBP eCLIP7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 EFTUD2Q15029 972 aaKnown RBP eCLIP7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 RPS6KA2Q15349 733 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 GUSBP1Q15486 140 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 ETFDHQ16134 617 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 PPP1R3AQ16821 1122 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 PGGHGQ32M88 737 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 BEX5Q5H9J7 111 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 ANKRD22Q5VYY1 191 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 ANGPTL8Q6UXH0 198 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 GRAMD2AQ8IUY3 354 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 VSTM4Q8IW00 320 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 DND1Q8IYX4 353 aaKnown RBP7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 WDSUB1Q8N9V3 476 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 UCN3Q969E3 161 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 TMEM41AQ96HV5 264 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 SORBS1Q9BX66 1292 aaKnown RBP7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 KLHL4Q9C0H6 718 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 OR2B2Q9GZK3 357 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 REXO4Q9GZR2 422 aaKnown RBP7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 RBSNQ9H1K0 784 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 ELOVL5Q9NYP7 299 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 TRMT6Q9UJA5 497 aaKnown RBP7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 FBXO5Q9UKT4 447 aa7.64□□□□□ -1.19
HMGB1P39-201ENST00000366304 FAM234BA2RU67 622 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 PFDN6O15212 129 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 OR10H2O60403 315 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 FTCDO95954 541 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 PTMAP06454 111 aaKnown RBP7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 ABCB1P08183 1280 aaPredicted RBP7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 C1GALT1C1LP0DN25 315 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 IGHV4-31P0DP07 118 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 CD22P20273 847 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 PTNP21246 168 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 TBXA2RP21731 343 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 TCEA1P23193 301 aaKnown RBP7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 ATP5A1P25705 553 aaKnown RBP7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 DPP4P27487 766 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 SSTR4P31391 388 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 CETN2P41208 172 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 CASP9P55211 416 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 B3GALT5-AS1P59052 145 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 BASP1P80723 227 aaKnown RBP7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 VLDLRP98155 873 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 FAPQ12884 760 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 GPS1Q13098 491 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 TBX2Q13207 712 aaPredicted RBP7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 DHX34Q14147 1143 aaKnown RBP7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 ZNF267Q14586 743 aaPredicted RBP7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 FAM174BQ3ZCQ3 159 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 TMIGD1Q6UXZ0 262 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 LINC00114Q6XXX2 140 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 STAC2Q6ZMT1 411 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 MEX3DQ86XN8 651 aaKnown RBP7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 WFDC8Q8IUA0 241 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 MYO1HQ8N1T3 1032 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 ACOT4Q8N9L9 421 aa7.63□□□□□ -1.19
HMGB1P39-201ENST00000366304 OR10H5Q8NGA6 315 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms