RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 LIPKQ5VXJ0 399 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 CPZQ66K79 652 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 ALKBH2Q6NS38 261 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 CRTC1Q6UUV9 634 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.2□□□□□ -0.62
COL9A1-202ENST00000357250 RNF111Q6ZNA4 994 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 CPXM2Q8N436 756 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 OR2L2Q8NH16 312 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 C16orf78Q8WTQ4 265 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 RHBDF1Q96CC6 855 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 F2RL3Q96RI0 385 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 TIGARQ9NQ88 270 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 TMEM181Q9P2C4 612 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 PGAP2Q9UHJ9 254 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 ASB4Q9Y574 426 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 CLCA1A8K7I4 914 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 RGS9O75916 674 aaPredicted RBP11.2□□□□□ -0.62
COL9A1-202ENST00000357250 PTTG1O95997 202 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 PCGF2P35227 344 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 VSX2P58304 361 aaPredicted RBP11.2□□□□□ -0.62
COL9A1-202ENST00000357250 ARHGAP19Q14CB8 494 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 ALG10Q5BKT4 473 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 CSNK1A1LQ8N752 337 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 CD200R1Q8TD46 325 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 LRR1Q96L50 414 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 FEVQ99581 238 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 SARDHQ9UL12 918 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 ZFR2Q9UPR6 939 aaKnown RBP11.2□□□□□ -0.62
COL9A1-202ENST00000357250 ACTL7AQ9Y615 435 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 NUMA1Q14980 2115 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 C2orf78A6NCI8 922 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 GLOD5A6NK44 160 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 M0R233 179 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 KIAA0513O60268 411 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 CDC40O60508 579 aaKnown RBP eCLIP11.2□□□□□ -0.62
COL9A1-202ENST00000357250 CTSAP10619 480 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 RBMXP38159 391 aaKnown RBP11.2□□□□□ -0.62
COL9A1-202ENST00000357250 PLP2Q04941 152 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 PHF19Q5T6S3 580 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 CEACAM19Q7Z692 300 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 SERPINA11Q86U17 422 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 NTMT1Q9BV86 223 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 CPNE5Q9HCH3 593 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 DKKL1Q9UK85 242 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 A0A0U1RQS6 177 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 TRAPPC13A5PLN9 417 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 RNASET2O00584 256 aaKnown RBP11.2□□□□□ -0.62
COL9A1-202ENST00000357250 CASC3O15234 703 aaKnown RBP11.2□□□□□ -0.62
COL9A1-202ENST00000357250 HCRTR2O43614 444 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 LILRB3O75022 631 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 KLF8O95600 359 aaPredicted RBP11.2□□□□□ -0.62
COL9A1-202ENST00000357250 GRK1Q15835 563 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 GTF2IRD2BQ6EKJ0 949 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 COMMD6Q7Z4G1 85 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 GTF2IRD2Q86UP8 949 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 Q8N402 240 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 GDPD1Q8N9F7 314 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 OR2T4Q8NH00 348 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 ELP5Q8TE02 316 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 CNN2Q99439 309 aaKnown RBP11.2□□□□□ -0.62
COL9A1-202ENST00000357250 ACTRT3Q9BYD9 372 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 OR2B2Q9GZK3 357 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 CSNK1G1Q9HCP0 422 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 GLS2Q9UI32 602 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 SLCO3A1Q9UIG8 710 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 NOX1Q9Y5S8 564 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 LRP5O75197 1615 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 F5P12259 2224 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 SOCS2O14508 198 aa11.19□□□□□ -0.62
COL9A1-202ENST00000357250 LDB2O43679 373 aa11.19□□□□□ -0.62
COL9A1-202ENST00000357250 SRCP12931 536 aa11.19□□□□□ -0.62
COL9A1-202ENST00000357250 TCEA1P23193 301 aaKnown RBP11.19□□□□□ -0.62
COL9A1-202ENST00000357250 HOXC13P31276 330 aa11.19□□□□□ -0.62
COL9A1-202ENST00000357250 MTNR1AP48039 350 aa11.19□□□□□ -0.62
COL9A1-202ENST00000357250 FAM76BQ5HYJ3 339 aa11.19□□□□□ -0.62
COL9A1-202ENST00000357250 LCTLQ6UWM7 567 aa11.19□□□□□ -0.62
COL9A1-202ENST00000357250 UGT2A3Q6UWM9 527 aa11.19□□□□□ -0.62
COL9A1-202ENST00000357250 ZC3H10Q96K80 434 aaKnown RBP11.19□□□□□ -0.62
COL9A1-202ENST00000357250 FUNDC2Q9BWH2 189 aa11.19□□□□□ -0.62
COL9A1-202ENST00000357250 CPEB1Q9BZB8 566 aaKnown RBP11.19□□□□□ -0.62
COL9A1-202ENST00000357250 ALKBH4Q9NXW9 302 aa11.19□□□□□ -0.62
COL9A1-202ENST00000357250 SPEF1Q9Y4P9 236 aa11.19□□□□□ -0.62
COL9A1-202ENST00000357250 EIF1AYO14602 144 aaKnown RBP11.19□□□□□ -0.62
COL9A1-202ENST00000357250 DUX1O43812 170 aa11.19□□□□□ -0.62
COL9A1-202ENST00000357250 H2BFMP0C1H6 154 aa11.19□□□□□ -0.62
COL9A1-202ENST00000357250 CAPN3P20807 821 aa11.19□□□□□ -0.62
COL9A1-202ENST00000357250 IGFBP6P24592 240 aaPredicted RBP11.19□□□□□ -0.62
COL9A1-202ENST00000357250 AGTR1P30556 359 aa11.19□□□□□ -0.62
COL9A1-202ENST00000357250 MAGEA8P43361 318 aa11.19□□□□□ -0.62
COL9A1-202ENST00000357250 EIF1AXP47813 144 aaKnown RBP11.19□□□□□ -0.62
COL9A1-202ENST00000357250 CST6Q15828 149 aa11.19□□□□□ -0.62
COL9A1-202ENST00000357250 DEFB134Q4QY38 66 aa11.19□□□□□ -0.62
COL9A1-202ENST00000357250 TMED4Q7Z7H5 227 aa11.19□□□□□ -0.62
COL9A1-202ENST00000357250 ZNF584Q8IVC4 421 aa11.19□□□□□ -0.62
COL9A1-202ENST00000357250 UBQLNLQ8IYU4 475 aa11.19□□□□□ -0.62
COL9A1-202ENST00000357250 PDLIM5Q96HC4 596 aaKnown RBP11.19□□□□□ -0.62
COL9A1-202ENST00000357250 TMEM19Q96HH6 336 aa11.19□□□□□ -0.62
COL9A1-202ENST00000357250 TMEM165Q9HC07 324 aa11.19□□□□□ -0.62
COL9A1-202ENST00000357250 MEPEQ9NQ76 525 aaPredicted RBP11.19□□□□□ -0.62
COL9A1-202ENST00000357250 TREX1Q9NSU2 369 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms