RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 KLHL3Q9UH77 587 aa12.12□□□□□ -0.47
CLK3-201ENST00000345005 ZNF229Q9UJW7 825 aa12.12□□□□□ -0.47
CLK3-201ENST00000345005 BDP1A6H8Y1 2624 aa12.12□□□□□ -0.47
CLK3-201ENST00000345005 A0A0G2JN53 185 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 SNX4O95219 450 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 KRT75O95678 551 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 SLC35G6P0C7Q6 338 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 HIST1H1TP22492 207 aaPredicted RBP12.11□□□□□ -0.47
CLK3-201ENST00000345005 PSMB9P28065 219 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 SLAMF1Q13291 335 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 RAPSNQ13702 412 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 VEZF1Q14119 521 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 RGNQ15493 299 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 NKG7Q16617 165 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 PRSS53Q2L4Q9 553 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 VMACQ2NL98 169 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 ZNF404Q494X3 552 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 SLX4IPQ5VYV7 408 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 FCRL6Q6DN72 434 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 ARMC6Q6NXE6 501 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 ZNF793Q6ZN11 406 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 USP43Q70EL4 1123 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 ZNF551Q7Z340 670 aaPredicted RBP12.11□□□□□ -0.47
CLK3-201ENST00000345005 PIWIL3Q7Z3Z3 882 aaKnown RBP12.11□□□□□ -0.47
CLK3-201ENST00000345005 B3GNT8Q7Z7M8 397 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 AKAP14Q86UN6 197 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 SLC22A16Q86VW1 577 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 OOSP2Q86WS3 158 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 ZZZ3Q8IYH5 903 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 MMP21Q8N119 569 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 ACOT4Q8N9L9 421 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 C1orf216Q8TAB5 229 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 NETO1Q8TDF5 533 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 LMX1AQ8TE12 382 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 DNASE2BQ8WZ79 361 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 GAL3ST3Q96A11 431 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 TM4SF19Q96DZ7 209 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 MACROD1Q9BQ69 325 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 SLC35A5Q9BS91 424 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 ITPAQ9BY32 194 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 DUSP15Q9H1R2 295 aaPredicted RBP12.11□□□□□ -0.47
CLK3-201ENST00000345005 ACOT13Q9NPJ3 140 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 PLCXD1Q9NUJ7 323 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 NPAP1Q9NZP6 1156 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 CACNA1IQ9P0X4 2223 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 NDRG4Q9ULP0 352 aaKnown RBP12.11□□□□□ -0.47
CLK3-201ENST00000345005 TMEM131Q92545 1883 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 A0A0J9YY10 115 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 OR5K3A6NET4 321 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 URADA6NGE7 173 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 EFCAB9A8MZ26 197 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 PPM1DO15297 605 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 PDPK1O15530 556 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 ASNA1O43681 348 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 FAM20BO75063 409 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 STATHP02808 62 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 UQCRC2P22695 453 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 S100A5P33763 92 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 CLK1P49759 484 aaKnown RBP12.11□□□□□ -0.47
CLK3-201ENST00000345005 MANFP55145 182 aaKnown RBP12.11□□□□□ -0.47
CLK3-201ENST00000345005 NXPH1P58417 271 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 HNRNPKP61978 463 aaKnown RBP eCLIP12.11□□□□□ -0.47
CLK3-201ENST00000345005 PRKCDQ05655 676 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 GAB1Q13480 694 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 WDR45BQ5MNZ6 344 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 MRM1Q6IN84 353 aaKnown RBP12.11□□□□□ -0.47
CLK3-201ENST00000345005 VN1R4Q7Z5H5 301 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 SFTPA2Q8IWL1 248 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 IQCF2Q8IXL9 164 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 TMEFF1Q8IYR6 380 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 AMER3Q8N944 861 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 TTC29Q8NA56 475 aaPredicted RBP12.11□□□□□ -0.47
CLK3-201ENST00000345005 CAMKVQ8NCB2 501 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 KBTBD8Q8NFY9 601 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 OR8K5Q8NH50 307 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 ZBED6CLQ96FA7 236 aaPredicted RBP12.11□□□□□ -0.47
CLK3-201ENST00000345005 NECAB3Q96P71 396 aaPredicted RBP12.11□□□□□ -0.47
CLK3-201ENST00000345005 OR2A5Q96R48 311 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 PITX2Q99697 317 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 ARPC5LQ9BPX5 153 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 ROGDIQ9GZN7 287 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 SLIRPQ9GZT3 109 aaKnown RBP12.11□□□□□ -0.47
CLK3-201ENST00000345005 UCK1Q9HA47 277 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 PILRAQ9UKJ1 303 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 MKLN1Q9UL63 735 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 TESMINQ9Y4I5 508 aa12.11□□□□□ -0.47
CLK3-201ENST00000345005 RGS13O14921 159 aa12.1□□□□□ -0.47
CLK3-201ENST00000345005 APOA1P02647 267 aa12.1□□□□□ -0.47
CLK3-201ENST00000345005 BCKDHBP21953 392 aa12.1□□□□□ -0.47
CLK3-201ENST00000345005 CHI3L1P36222 383 aaPredicted RBP12.1□□□□□ -0.47
CLK3-201ENST00000345005 FRKP42685 505 aaPredicted RBP12.1□□□□□ -0.47
CLK3-201ENST00000345005 IST1P53990 364 aa12.1□□□□□ -0.47
CLK3-201ENST00000345005 PCBP4P57723 403 aaKnown RBP12.1□□□□□ -0.47
CLK3-201ENST00000345005 OLR1P78380 273 aa12.1□□□□□ -0.47
CLK3-201ENST00000345005 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.1□□□□□ -0.47
CLK3-201ENST00000345005 MAD2L1BPQ15013 274 aaPredicted RBP12.1□□□□□ -0.47
CLK3-201ENST00000345005 KCNJ8Q15842 424 aa12.1□□□□□ -0.47
CLK3-201ENST00000345005 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.1□□□□□ -0.47
CLK3-201ENST00000345005 NDUFAF5Q5TEU4 345 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms