RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 ENOPH1Q9UHY7 261 aa18.28■□□□□ 0.52
COL9A3-201ENST00000343916 ASB4Q9Y574 426 aa18.28■□□□□ 0.52
COL9A3-201ENST00000343916 GPC6Q9Y625 555 aaPredicted RBP18.28■□□□□ 0.52
COL9A3-201ENST00000343916 PRICKLE3O43900 615 aaPredicted RBP18.27■□□□□ 0.52
COL9A3-201ENST00000343916 EML2O95834 649 aa18.27■□□□□ 0.52
COL9A3-201ENST00000343916 HMGN2P05204 90 aaKnown RBP18.27■□□□□ 0.52
COL9A3-201ENST00000343916 NTSP30990 170 aa18.27■□□□□ 0.52
COL9A3-201ENST00000343916 ADPRHP54922 357 aa18.27■□□□□ 0.52
COL9A3-201ENST00000343916 PPP2CBP62714 309 aa18.27■□□□□ 0.52
COL9A3-201ENST00000343916 TRA2BP62995 288 aaKnown RBP18.27■□□□□ 0.52
COL9A3-201ENST00000343916 PPP2CAP67775 309 aa18.27■□□□□ 0.52
COL9A3-201ENST00000343916 FUT5Q11128 374 aa18.27■□□□□ 0.52
COL9A3-201ENST00000343916 TARDBPQ13148 414 aaKnown RBP eCLIP18.27■□□□□ 0.52
COL9A3-201ENST00000343916 LRRC32Q14392 662 aa18.27■□□□□ 0.52
COL9A3-201ENST00000343916 MLC1Q15049 377 aa18.27■□□□□ 0.52
COL9A3-201ENST00000343916 MED22Q15528 200 aa18.27■□□□□ 0.52
COL9A3-201ENST00000343916 TMEM196Q5HYL7 178 aa18.27■□□□□ 0.52
COL9A3-201ENST00000343916 BCDIN3DQ7Z5W3 292 aaKnown RBP18.27■□□□□ 0.52
COL9A3-201ENST00000343916 TTLQ8NG68 377 aa18.27■□□□□ 0.52
COL9A3-201ENST00000343916 S100ZQ8WXG8 99 aa18.27■□□□□ 0.52
COL9A3-201ENST00000343916 ZNF764Q96H86 408 aaPredicted RBP18.27■□□□□ 0.52
COL9A3-201ENST00000343916 FAIM2Q9BWQ8 316 aa18.27■□□□□ 0.52
COL9A3-201ENST00000343916 SACM1LQ9NTJ5 587 aa18.27■□□□□ 0.52
COL9A3-201ENST00000343916 A4GNTQ9UNA3 340 aa18.27■□□□□ 0.52
COL9A3-201ENST00000343916 CA5BQ9Y2D0 317 aa18.27■□□□□ 0.52
COL9A3-201ENST00000343916 KCNE3Q9Y6H6 103 aa18.27■□□□□ 0.52
COL9A3-201ENST00000343916 POM121BA6NF01 834 aa18.27■□□□□ 0.51
COL9A3-201ENST00000343916 PRR19A6NJB7 356 aa18.27■□□□□ 0.51
COL9A3-201ENST00000343916 ZW10O43264 779 aa18.27■□□□□ 0.51
COL9A3-201ENST00000343916 PLRG1O43660 514 aaKnown RBP18.27■□□□□ 0.51
COL9A3-201ENST00000343916 ENTPD6O75354 484 aa18.27■□□□□ 0.51
COL9A3-201ENST00000343916 AIFM1O95831 613 aa18.27■□□□□ 0.51
COL9A3-201ENST00000343916 EPPINO95925 133 aa18.27■□□□□ 0.51
COL9A3-201ENST00000343916 CHRM4P08173 479 aa18.27■□□□□ 0.51
COL9A3-201ENST00000343916 OSMP13725 252 aa18.27■□□□□ 0.51
COL9A3-201ENST00000343916 CLDN2P57739 230 aa18.27■□□□□ 0.51
COL9A3-201ENST00000343916 TOR1AIP1Q5JTV8 583 aa18.27■□□□□ 0.51
COL9A3-201ENST00000343916 PGBD2Q6P3X8 592 aa18.27■□□□□ 0.51
COL9A3-201ENST00000343916 TMEM107Q6UX40 140 aa18.27■□□□□ 0.51
COL9A3-201ENST00000343916 CADM3Q8N126 398 aa18.27■□□□□ 0.51
COL9A3-201ENST00000343916 TBC1D19Q8N5T2 526 aa18.27■□□□□ 0.51
COL9A3-201ENST00000343916 FAM46DQ8NEK8 389 aa18.27■□□□□ 0.51
COL9A3-201ENST00000343916 MCFD2Q8NI22 146 aa18.27■□□□□ 0.51
COL9A3-201ENST00000343916 C16orf58Q96GQ5 468 aa18.27■□□□□ 0.51
COL9A3-201ENST00000343916 CLN6Q9NWW5 311 aa18.27■□□□□ 0.51
COL9A3-201ENST00000343916 TLR4O00206 839 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 DBTP11182 482 aaKnown RBP18.26■□□□□ 0.51
COL9A3-201ENST00000343916 ATP5A1P25705 553 aaKnown RBP18.26■□□□□ 0.51
COL9A3-201ENST00000343916 TEAD1P28347 426 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 GSTM5P46439 218 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 RGS6P49758 472 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 SNRPNP63162 240 aaKnown RBP18.26■□□□□ 0.51
COL9A3-201ENST00000343916 TEKQ02763 1124 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 IRF3Q14653 427 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 SHHQ15465 462 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 TMEM35AQ53FP2 167 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 OR4E2Q8NGC2 313 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 SLC35B4Q969S0 331 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 ITPKCQ96DU7 683 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 CHCHD6Q9BRQ6 235 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 CENPOQ9BU64 300 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 RAB11FIP5Q9BXF6 653 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 DSN1Q9H410 356 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 EHD3Q9NZN3 535 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 DNAJC27Q9NZQ0 273 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 ISM1B1AKI9 464 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 H0Y8X5 98 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 UGT2B17O75795 530 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 AK4P27144 223 aaPredicted RBP18.26■□□□□ 0.51
COL9A3-201ENST00000343916 PPP2R1BP30154 601 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 RD3Q7Z3Z2 195 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 CLIP4Q8N3C7 705 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 OR6T1Q8NGN1 323 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 DHRS1Q96LJ7 313 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 POLR2J3Q9H1A7 115 aaKnown RBP18.26■□□□□ 0.51
COL9A3-201ENST00000343916 CD93Q9NPY3 652 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 EQTNQ9NQ60 294 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 POLE4Q9NR33 117 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 GIN1Q9NXP7 522 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 TBC1D29Q9UFV1 150 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 APOBEC3BQ9UH17 382 aaKnown RBP18.26■□□□□ 0.51
COL9A3-201ENST00000343916 IFT52Q9Y366 437 aa18.26■□□□□ 0.51
COL9A3-201ENST00000343916 TRBV23OR9-2A0A075B6M9 112 aa18.25■□□□□ 0.51
COL9A3-201ENST00000343916 FAAHO00519 579 aa18.25■□□□□ 0.51
COL9A3-201ENST00000343916 AQP9O43315 295 aa18.25■□□□□ 0.51
COL9A3-201ENST00000343916 DNTTP04053 509 aa18.25■□□□□ 0.51
COL9A3-201ENST00000343916 RPLP0P05388 317 aaKnown RBP18.25■□□□□ 0.51
COL9A3-201ENST00000343916 TNNI3P19429 210 aa18.25■□□□□ 0.51
COL9A3-201ENST00000343916 IQCF1Q8N6M8 205 aa18.25■□□□□ 0.51
COL9A3-201ENST00000343916 OR2L5Q8NG80 312 aa18.25■□□□□ 0.51
COL9A3-201ENST00000343916 RASSF5Q8WWW0 418 aa18.25■□□□□ 0.51
COL9A3-201ENST00000343916 PRR14Q9BWN1 585 aa18.25■□□□□ 0.51
COL9A3-201ENST00000343916 DZANK1Q9NVP4 752 aa18.25■□□□□ 0.51
COL9A3-201ENST00000343916 ACAD8Q9UKU7 415 aa18.25■□□□□ 0.51
COL9A3-201ENST00000343916 MGAT4BQ9UQ53 548 aa18.25■□□□□ 0.51
COL9A3-201ENST00000343916 CACNB4O00305 520 aaPredicted RBP18.25■□□□□ 0.51
COL9A3-201ENST00000343916 KDM1AO60341 852 aa18.25■□□□□ 0.51
COL9A3-201ENST00000343916 CNOT3O75175 753 aaKnown RBP18.25■□□□□ 0.51
COL9A3-201ENST00000343916 LAMP2P13473 410 aa18.25■□□□□ 0.51
COL9A3-201ENST00000343916 BUD31P41223 144 aaPredicted RBP18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms