RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 EXOSC4Q9NPD3 245 aaKnown RBP9.77□□□□□ -0.85
LIMA1-201ENST00000341247 CELSR3Q9NYQ7 3312 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 ADAM23O75077 832 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 DNAJB6O75190 326 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 UGT2B17O75795 530 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 ATP5A1P25705 553 aaKnown RBP9.76□□□□□ -0.85
LIMA1-201ENST00000341247 HYAL2Q12891 473 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 TRIM16LQ309B1 348 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 SDE2Q6IQ49 451 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 ABHD17CQ6PCB6 329 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 PSMA8Q8TAA3 256 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 DYNC2LI1Q8TCX1 351 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 CENPOQ9BU64 300 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 FNDC11Q9BVV2 318 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 UCK2Q9BZX2 261 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 TMEM168Q9H0V1 697 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 TRPV4Q9HBA0 871 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 CLEC2DQ9UHP7 191 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 ENTPD4Q9Y227 616 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 ARHGEF17Q96PE2 2063 aaPredicted RBP9.76□□□□□ -0.85
LIMA1-201ENST00000341247 SPTBP11277 2137 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 PRSS38A1L453 326 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 KLHL33A6NCF5 533 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 TLR4O00206 839 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 MAN2B1O00754 1011 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 DPM1O60762 260 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 SERPINB7O75635 380 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 GABRB1P18505 474 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 PPP2R1BP30154 601 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 NTSR1P30989 418 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 ACSL1P33121 698 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 LIMS1P48059 325 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 KCNJ5P48544 419 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 IFITM3Q01628 133 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 HYAL1Q12794 435 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 TSTQ16762 297 aaKnown RBP9.76□□□□□ -0.85
LIMA1-201ENST00000341247 IQCHQ86VS3 1027 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 ZNF761Q86XN6 746 aaPredicted RBP9.76□□□□□ -0.85
LIMA1-201ENST00000341247 IL17RCQ8NAC3 791 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 OR2L8Q8NGY9 312 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 SIPA1Q96FS4 1042 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 COX4I2Q96KJ9 171 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 PHOX2BQ99453 314 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 SLC28A3Q9HAS3 691 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 CAPN10Q9HC96 672 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 HMG20AQ9NP66 347 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 NECTIN3Q9NQS3 549 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 PRDM7Q9NQW5 492 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 FAIMQ9NVQ4 179 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 NTNG1Q9Y2I2 539 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 DNMT3AQ9Y6K1 912 aaPredicted RBP9.76□□□□□ -0.85
LIMA1-201ENST00000341247 GSAPA4D1B5 854 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 SYNDIG1LA6NDD5 238 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 ZW10O43264 779 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 POU2F2P09086 479 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 XKP51811 444 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 UGT2B15P54855 530 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 DBPQ10586 325 aaPredicted RBP9.76□□□□□ -0.85
LIMA1-201ENST00000341247 ZNF846Q147U1 533 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 C6orf132Q5T0Z8 1188 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 PODNL1Q6PEZ8 512 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 APOBEC4Q8WW27 367 aaKnown RBP9.76□□□□□ -0.85
LIMA1-201ENST00000341247 ZNF354BQ96LW1 612 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 SIGLEC11Q96RL6 698 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 DNAAF2Q9NVR5 837 aaKnown RBP9.76□□□□□ -0.85
LIMA1-201ENST00000341247 CLN6Q9NWW5 311 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 OBP2AQ9NY56 170 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 ERGIC3Q9Y282 383 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 TSC22D4Q9Y3Q8 395 aa9.76□□□□□ -0.85
LIMA1-201ENST00000341247 AGRPO00253 132 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 ZSCAN9O15535 394 aaPredicted RBP9.75□□□□□ -0.85
LIMA1-201ENST00000341247 CNOT3O75175 753 aaKnown RBP9.75□□□□□ -0.85
LIMA1-201ENST00000341247 AVPR1BP47901 424 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 SERPINB10P48595 397 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 MAP4K2Q12851 820 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 UBE2UQ5VVX9 321 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 ZNF770Q6IQ21 691 aaPredicted RBP9.75□□□□□ -0.85
LIMA1-201ENST00000341247 PAQR6Q6TCH4 344 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 AMIGO1Q86WK6 493 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 VRK2Q86Y07 508 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 SLC34A3Q8N130 599 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 PSD4Q8NDX1 1056 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 SUN3Q8TAQ9 357 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 TIMM29Q9BSF4 260 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 FTSJ1Q9UET6 329 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 SLC17A4Q9Y2C5 497 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.75□□□□□ -0.85
LIMA1-201ENST00000341247 ASB4Q9Y574 426 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 TLX2O43763 284 aaPredicted RBP9.75□□□□□ -0.85
LIMA1-201ENST00000341247 PDE9AO76083 593 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 POLR2CP19387 275 aaPredicted RBP9.75□□□□□ -0.85
LIMA1-201ENST00000341247 HMGA2P52926 109 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 SIM1P81133 766 aaPredicted RBP9.75□□□□□ -0.85
LIMA1-201ENST00000341247 FUT5Q11128 374 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 DEFB134Q4QY38 66 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 CASP12Q6UXS9 341 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 DENND6BQ8NEG7 585 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 RNF217Q8TC41 542 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 DACH2Q96NX9 599 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 OR2M4Q96R27 311 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms