RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 CITED2Q99967 270 aaPredicted RBP1.34□□□□□ -2.19
LINC00643-201ENST00000334389 LMF2Q9BU23 707 aaKnown RBP1.34□□□□□ -2.19
LINC00643-201ENST00000334389 TMEM70Q9BUB7 260 aa1.34□□□□□ -2.19
LINC00643-201ENST00000334389 KRTAP4-4Q9BYR3 166 aa1.34□□□□□ -2.19
LINC00643-201ENST00000334389 RTN4RQ9BZR6 473 aa1.34□□□□□ -2.19
LINC00643-201ENST00000334389 POLR2J2Q9GZM3 115 aaKnown RBP1.34□□□□□ -2.19
LINC00643-201ENST00000334389 RAB1BQ9H0U4 201 aa1.34□□□□□ -2.19
LINC00643-201ENST00000334389 TSPYL1Q9H0U9 437 aa1.34□□□□□ -2.19
LINC00643-201ENST00000334389 POLR2J3Q9H1A7 115 aaKnown RBP1.34□□□□□ -2.19
LINC00643-201ENST00000334389 SLC6A15Q9H2J7 730 aa1.34□□□□□ -2.19
LINC00643-201ENST00000334389 TCEAL2Q9H3H9 227 aaPredicted RBP1.34□□□□□ -2.19
LINC00643-201ENST00000334389 FKRPQ9H9S5 495 aa1.34□□□□□ -2.19
LINC00643-201ENST00000334389 SEPSECSQ9HD40 501 aaKnown RBP1.34□□□□□ -2.19
LINC00643-201ENST00000334389 SLC17A5Q9NRA2 495 aa1.34□□□□□ -2.19
LINC00643-201ENST00000334389 ST7Q9NRC1 585 aa1.34□□□□□ -2.19
LINC00643-201ENST00000334389 FAM120CQ9NX05 1096 aaKnown RBP1.34□□□□□ -2.19
LINC00643-201ENST00000334389 KLHL13Q9P2N7 655 aa1.34□□□□□ -2.19
LINC00643-201ENST00000334389 ANAPC5Q9UJX4 755 aa1.34□□□□□ -2.19
LINC00643-201ENST00000334389 NAGPAQ9UK23 515 aa1.34□□□□□ -2.19
LINC00643-201ENST00000334389 TRAPPC4Q9Y296 219 aa1.34□□□□□ -2.19
LINC00643-201ENST00000334389 CARD8Q9Y2G2 431 aa1.34□□□□□ -2.19
LINC00643-201ENST00000334389 PLEKHA6Q9Y2H5 1048 aa1.34□□□□□ -2.19
LINC00643-201ENST00000334389 ZSCAN21Q9Y5A6 473 aaPredicted RBP1.34□□□□□ -2.19
LINC00643-201ENST00000334389 A0A1W2PPR1 153 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 MROH6A6NGR9 719 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 K7EIL1 84 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 M0QZK8 103 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 LGALS9O00182 355 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 CCP110O43303 1012 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 CCNT1O60563 726 aaKnown RBP1.34□□□□□ -2.2
LINC00643-201ENST00000334389 SNX2O60749 519 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 RAMP2O60895 175 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 PAGE1O75459 146 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 SLC25A12O75746 678 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 PIGNO95427 931 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 CTDNEP1O95476 244 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 GPIP06744 558 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 CSF1P09603 554 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 TSPAN19P0C672 248 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 SLC35E2BP0CK96 405 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 FDPSP14324 419 aaKnown RBP1.34□□□□□ -2.2
LINC00643-201ENST00000334389 MGMTP16455 207 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 PRDX3P30048 256 aaKnown RBP1.34□□□□□ -2.2
LINC00643-201ENST00000334389 PEBP1P30086 187 aaKnown RBP1.34□□□□□ -2.2
LINC00643-201ENST00000334389 ARHGAP25P42331 645 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 KIR2DL2P43627 348 aaPredicted RBP1.34□□□□□ -2.2
LINC00643-201ENST00000334389 SCTRP47872 440 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF140P52738 457 aaPredicted RBP1.34□□□□□ -2.2
LINC00643-201ENST00000334389 PNLIPRP2P54317 469 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 EMP2P54851 167 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 MAZP56270 477 aaKnown RBP1.34□□□□□ -2.2
LINC00643-201ENST00000334389 ZBED6P86452 979 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 IL9RQ01113 521 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 DEFA6Q01524 100 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 PDCLQ13371 301 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 PKP1Q13835 747 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 ZMYND11Q15326 602 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 ZRSR1Q15695 479 aaKnown RBP1.34□□□□□ -2.2
LINC00643-201ENST00000334389 IL17AQ16552 155 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 FILIP1LQ4L180 1135 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 SFRP5Q5T4F7 317 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 LCN1P1Q5VSP4 162 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 SLC30A9Q6PML9 568 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 BLOC1S2Q6QNY1 142 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 TFAP2EQ6VUC0 442 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF662Q6ZS27 426 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 NUFIP2Q7Z417 695 aaKnown RBP1.34□□□□□ -2.2
LINC00643-201ENST00000334389 PIGWQ7Z7B1 504 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 TPH2Q8IWU9 490 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 FAM9BQ8IZU0 186 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 TBC1D19Q8N5T2 526 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 TMEM251Q8N6I4 163 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 TMEM217Q8N7C4 229 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 SYT8Q8NBV8 401 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 FAM46DQ8NEK8 389 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF596Q8TC21 504 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF473Q8WTR7 871 aaKnown RBP1.34□□□□□ -2.2
LINC00643-201ENST00000334389 SSMEM1Q8WWF3 244 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 SORCS1Q8WY21 1168 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 INTS12Q96CB8 462 aaKnown RBP1.34□□□□□ -2.2
LINC00643-201ENST00000334389 PRR25Q96S07 402 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 CYTH2Q99418 400 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 GATA5Q9BWX5 397 aaPredicted RBP1.34□□□□□ -2.2
LINC00643-201ENST00000334389 SORBS1Q9BX66 1292 aaKnown RBP1.34□□□□□ -2.2
LINC00643-201ENST00000334389 LRRC4Q9HBW1 653 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 XAB2Q9HCS7 855 aaKnown RBP1.34□□□□□ -2.2
LINC00643-201ENST00000334389 SDHAF3Q9NRP4 125 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 RBM22Q9NW64 420 aaKnown RBP eCLIP1.34□□□□□ -2.2
LINC00643-201ENST00000334389 RMND1Q9NWS8 449 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 FRRS1LQ9P0K9 344 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 RCOR1Q9UKL0 485 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 SAMM50Q9Y512 469 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 SNX9Q9Y5X1 595 aa1.34□□□□□ -2.2
LINC00643-201ENST00000334389 APCP25054 2843 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 A0A1B0GTI1 187 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 OR6C74A6NCV1 312 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 ERICH4A6NGS2 130 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 CASKO14936 926 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 FFAR2O15552 330 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 ZNHIT1O43257 154 aa1.33□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms