RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 CA5AP35218 305 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 TAS2R46P59540 309 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 PRPS1P60891 318 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 RSU1Q15404 277 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 TARBP2Q15633 366 aaKnown RBP13.68□□□□□ -0.22
COL7A1-201ENST00000328333 DUSP28Q4G0W2 176 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 ACTBL2Q562R1 376 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 MLIPQ5VWP3 458 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 ZNF783Q6ZMS7 281 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 TMEM173Q86WV6 379 aaPredicted RBP13.68□□□□□ -0.22
COL7A1-201ENST00000328333 KLK1P06870 262 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 AKR1C2P52895 323 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 GINS1Q14691 196 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 FLYWCH1Q4VC44 716 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 TMEM41BQ5BJD5 291 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 SLC2A7Q6PXP3 512 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 FAM110BQ8TC76 370 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 FRZBQ92765 325 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 SAMD11Q96NU1 681 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 NIPSNAP3BQ9BS92 247 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 RNF32Q9H0A6 362 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 ZBTB7AO95365 584 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 HLA-DQB2P05538 268 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 PMS2P3Q13401 168 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 GPR157Q5UAW9 335 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 DCAF12L1Q5VU92 463 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 CNIH2Q6PI25 160 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 TMEM185AQ8NFB2 350 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 PMM1Q92871 262 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 PSMG2Q969U7 264 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 LRR1Q96L50 414 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 ABRACLQ9P1F3 81 aa13.68□□□□□ -0.22
COL7A1-201ENST00000328333 CYB5BO43169 146 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 STBD1O95210 358 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 SGCBQ16585 318 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 THOC6Q86W42 341 aaKnown RBP13.67□□□□□ -0.22
COL7A1-201ENST00000328333 OR6T1Q8NGN1 323 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 LRCH3Q96II8 777 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 SNX18Q96RF0 628 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 MFFQ9GZY8 342 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 PDZD7Q9H5P4 517 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 SMOXQ9NWM0 555 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 ZNF254O75437 659 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 OR1D2P34982 312 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 STT3AP46977 705 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 ITPK1Q13572 414 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 GRIN2CQ14957 1233 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 PCK2Q16822 640 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 TSSK4Q6SA08 328 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 VGLL2Q8N8G2 317 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 UPRTQ96BW1 309 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 TMEM181Q9P2C4 612 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 HAS3O00219 553 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 HTR3BO95264 441 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 EPHX1P07099 455 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 SLAMF1Q13291 335 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 FAM214AQ32MH5 1076 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 ZNF704Q6ZNC4 412 aaPredicted RBP13.67□□□□□ -0.22
COL7A1-201ENST00000328333 ZFAND4Q86XD8 727 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 C4orf32Q8N8J7 132 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 OR6K2Q8NGY2 324 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 ADAMTS18Q8TE60 1221 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 NT5C3BQ969T7 300 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 NTPCRQ9BSD7 190 aaKnown RBP13.67□□□□□ -0.22
COL7A1-201ENST00000328333 GJE1A6NN92 205 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 RNF212BA8MTL3 300 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 ZNF705GA8MUZ8 300 aaPredicted RBP13.67□□□□□ -0.22
COL7A1-201ENST00000328333 EIF3FO00303 357 aaPredicted RBP13.67□□□□□ -0.22
COL7A1-201ENST00000328333 ZDHHC11BP0C7U3 371 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 NDUFV2P19404 249 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 CRYZQ08257 329 aaKnown RBP13.67□□□□□ -0.22
COL7A1-201ENST00000328333 APOBEC3HQ6NTF7 200 aaKnown RBP13.67□□□□□ -0.22
COL7A1-201ENST00000328333 PCED1BQ96HM7 432 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 ASB3Q9Y575 518 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 PIGRP01833 764 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 MLLT3P42568 568 aaPredicted RBP13.67□□□□□ -0.22
COL7A1-201ENST00000328333 MZT1Q08AG7 82 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 CCNJQ5T5M9 372 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 CATSPERGQ6ZRH7 1159 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 FBXO15Q8NCQ5 510 aaPredicted RBP13.67□□□□□ -0.22
COL7A1-201ENST00000328333 WDR6Q9NNW5 1121 aaKnown RBP13.67□□□□□ -0.22
COL7A1-201ENST00000328333 TP53TG5Q9Y2B4 290 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 DYRK1AQ13627 763 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 SMIM28A0A1B0GU29 152 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 SCGB1D1O95968 90 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 HBE1P02100 147 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 ITGAMP11215 1152 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 PTPN2P17706 415 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 SLC9B2Q86UD5 537 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 TXNDC5Q8NBS9 432 aaKnown RBP13.67□□□□□ -0.22
COL7A1-201ENST00000328333 STRA6Q9BX79 667 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 BEX2Q9BXY8 128 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 RBCK1Q9BYM8 510 aa13.67□□□□□ -0.22
COL7A1-201ENST00000328333 ZNF43P17038 809 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 TATDN3Q17R31 274 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 SSX9Q7RTT3 188 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 DCUN1D4Q92564 292 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 TIMM8BQ9Y5J9 83 aaPredicted RBP13.66□□□□□ -0.22
COL7A1-201ENST00000328333 ANKRD66B4E2M5 251 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 GDF10P55107 478 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms