RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 GLT8D1Q68CQ7 371 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 ZNF776Q68DI1 518 aaPredicted RBP10.99□□□□□ -0.65
VPS39-201ENST00000318006 TCEAL6Q6IPX3 200 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 TMIGD1Q6UXZ0 262 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 ZNF584Q8IVC4 421 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 SLC5A8Q8N695 610 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 ACBD7Q8N6N7 88 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 THEM6Q8WUY1 208 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 RAB8BQ92930 207 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 CIDECQ96AQ7 238 aaPredicted RBP10.99□□□□□ -0.65
VPS39-201ENST00000318006 MCHR1Q99705 422 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 ABCG4Q9H172 646 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 TMEM45AQ9NWC5 275 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 FBXL12Q9NXK8 326 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 CFAP20Q9Y6A4 193 aaKnown RBP10.99□□□□□ -0.65
VPS39-201ENST00000318006 CHD4Q14839 1912 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 EIF1AYO14602 144 aaKnown RBP10.99□□□□□ -0.65
VPS39-201ENST00000318006 ERI3O43414 337 aaKnown RBP10.99□□□□□ -0.65
VPS39-201ENST00000318006 ICMTO60725 284 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 TUBG1P23258 451 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 EIF1AXP47813 144 aaKnown RBP10.99□□□□□ -0.65
VPS39-201ENST00000318006 CLDN8P56748 225 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 SLC22A15Q8IZD6 547 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 MS4A15Q8N5U1 240 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 ARFGAP1Q8N6T3 406 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 ZFP41Q8N8Y5 198 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 TMEM145Q8NBT3 493 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 BBS10Q8TAM1 723 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 FANK1Q8TC84 345 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 OR51B5Q9H339 312 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 CENPMQ9NSP4 180 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 YARS2Q9Y2Z4 477 aaKnown RBP10.99□□□□□ -0.65
VPS39-201ENST00000318006 C7orf72A4D263 438 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 OR6C74A6NCV1 312 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 TLX3O43711 291 aaPredicted RBP10.98□□□□□ -0.65
VPS39-201ENST00000318006 AP1G1O43747 822 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 TGM6O95932 706 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 HLA-EP13747 358 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 CSF2RAP15509 400 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 S100PP25815 95 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 PREPP48147 710 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 STK19P49842 368 aaPredicted RBP10.98□□□□□ -0.65
VPS39-201ENST00000318006 ARSDP51689 593 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 TMEM115Q12893 351 aaPredicted RBP10.98□□□□□ -0.65
VPS39-201ENST00000318006 KCNC3Q14003 757 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 LRP8Q14114 963 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 MARCH8Q5T0T0 291 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 C3P1Q6ZMU1 363 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 OR14K1Q8NGZ2 314 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 P2RY13Q9BPV8 354 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 SPHK2Q9NRA0 654 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 TAS2R8Q9NYW2 309 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 COL22A1Q8NFW1 1626 aaPredicted RBP10.98□□□□□ -0.65
VPS39-201ENST00000318006 CLDN24A6NM45 220 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 ZNF208O43345 1280 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 LEFTY1O75610 366 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 LATS1O95835 1130 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 RHOP08100 348 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 MRPL3P09001 348 aaKnown RBP10.98□□□□□ -0.65
VPS39-201ENST00000318006 PYCR1P32322 319 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 CNR2P34972 360 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 EIF2DP41214 584 aaKnown RBP10.98□□□□□ -0.65
VPS39-201ENST00000318006 SOX2P48431 317 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 RCAN2Q14206 197 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 ABRAXAS2Q15018 415 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 CEP68Q76N32 757 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 SLC5A11Q8WWX8 675 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 SCAMP4Q969E2 229 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 CNTNAP3BQ96NU0 1288 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 PTTG3PQ9NZH4 202 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 CACNG2Q9Y698 323 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 IFNA17P01571 189 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 RPL10P27635 214 aaKnown RBP10.98□□□□□ -0.65
VPS39-201ENST00000318006 ADH7P40394 386 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 PITPNBP48739 271 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 PGGT1BP53609 377 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 BTN1A1Q13410 526 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 GRHL2Q6ISB3 625 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 RANBP10Q6VN20 620 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 SYT14Q8NB59 555 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 OR9A1PQ8NGU1 263 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 NEDD4LQ96PU5 975 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 DPH2Q9BQC3 489 aaPredicted RBP10.98□□□□□ -0.65
VPS39-201ENST00000318006 PBDC1Q9BVG4 233 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 MRPL15Q9P015 296 aaKnown RBP10.98□□□□□ -0.65
VPS39-201ENST00000318006 KLHL9Q9P2J3 617 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 MAFFQ9ULX9 164 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 NENFQ9UMX5 172 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 LAMA4Q16363 1823 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 ZCWPW2A0A1B0GU75 182 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 A0A1B0GVT2 93 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 GRXCR2A6NFK2 248 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 TNFRSF10AO00220 468 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 SPDEFO95238 335 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 GBAP04062 536 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 CAPNS1P04632 268 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 MTNR1AP48039 350 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 ALDH3B2P48448 385 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 SELPLGQ14242 412 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 PCBP2Q15366 365 aaKnown RBP eCLIP10.98□□□□□ -0.652e-6■■■■□ 23.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms