RNA–Protein interactions for RNA: ENST00000308537.4

PDZRN3-202, Transcript of PDZ domain containing ring finger 3, humanhuman

TSL 1 (best) BASIC

Gene PDZRN3, Length 1,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3-202ENST00000308537 SIRT5Q9NXA8 310 aa18.25■□□□□ 0.51
PDZRN3-202ENST00000308537 MCM8Q9UJA3 840 aa18.25■□□□□ 0.51
PDZRN3-202ENST00000308537 MED12Q93074 2177 aa18.24■□□□□ 0.51
PDZRN3-202ENST00000308537 A0A1B0GVC2 190 aa18.24■□□□□ 0.51
PDZRN3-202ENST00000308537 CDC40O60508 579 aaKnown RBP eCLIP18.24■□□□□ 0.51
PDZRN3-202ENST00000308537 ULK1O75385 1050 aa18.24■□□□□ 0.51
PDZRN3-202ENST00000308537 PDE9AO76083 593 aa18.24■□□□□ 0.51
PDZRN3-202ENST00000308537 ENO1P06733 434 aaKnown RBP18.24■□□□□ 0.51
PDZRN3-202ENST00000308537 RFPL3SP0C7P2 107 aa18.24■□□□□ 0.51
PDZRN3-202ENST00000308537 PORP16435 677 aaPredicted RBP18.24■□□□□ 0.51
PDZRN3-202ENST00000308537 MAGEA5P43359 124 aa18.24■□□□□ 0.51
PDZRN3-202ENST00000308537 CASP6P55212 293 aa18.24■□□□□ 0.51
PDZRN3-202ENST00000308537 SLC18A2Q05940 514 aa18.24■□□□□ 0.51
PDZRN3-202ENST00000308537 MAP4K2Q12851 820 aa18.24■□□□□ 0.51
PDZRN3-202ENST00000308537 SLC22A10Q63ZE4 541 aa18.24■□□□□ 0.51
PDZRN3-202ENST00000308537 ARHGAP11AQ6P4F7 1023 aa18.24■□□□□ 0.51
PDZRN3-202ENST00000308537 XKRXQ6PP77 449 aa18.24■□□□□ 0.51
PDZRN3-202ENST00000308537 RGS9BPQ6ZS82 235 aa18.24■□□□□ 0.51
PDZRN3-202ENST00000308537 GK5Q6ZS86 529 aa18.24■□□□□ 0.51
PDZRN3-202ENST00000308537 FAM47EQ6ZV65 393 aa18.24■□□□□ 0.51
PDZRN3-202ENST00000308537 TICAM1Q8IUC6 712 aa18.24■□□□□ 0.51
PDZRN3-202ENST00000308537 SLC34A3Q8N130 599 aa18.24■□□□□ 0.51
PDZRN3-202ENST00000308537 FBXW8Q8N3Y1 598 aa18.24■□□□□ 0.51
PDZRN3-202ENST00000308537 RPRMLQ8N4K4 120 aa18.24■□□□□ 0.51
PDZRN3-202ENST00000308537 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.24■□□□□ 0.513e-8■■■■□ 22.1
PDZRN3-202ENST00000308537 RYDENQ9NUL5 291 aaKnown RBP18.24■□□□□ 0.51
PDZRN3-202ENST00000308537 C2orf92A0A1B0GVN3 265 aa18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 C19orf84I3L1E1 186 aa18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 PRRG2O14669 202 aa18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 CBX7O95931 251 aa18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 ENDOUP21128 410 aaKnown RBP18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 GPX3P22352 226 aa18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 FEN1P39748 380 aaKnown RBP18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 DNAJB13P59910 316 aa18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 VSNL1P62760 191 aa18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 CEBPEQ15744 281 aa18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 PRSS53Q2L4Q9 553 aa18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 PRAMEF20Q5VT98 475 aa18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 FRMD7Q6ZUT3 714 aa18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 TRILQ7L0X0 811 aa18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 SLC22A16Q86VW1 577 aa18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 DND1Q8IYX4 353 aaKnown RBP18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 FAM109AQ8N4B1 249 aa18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 GBP7Q8N8V2 638 aaPredicted RBP18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 ACBD4Q8NC06 268 aa18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 C17orf47Q8NEP4 570 aa18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 PUM2Q8TB72 1066 aaKnown RBP eCLIP18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 ZNF703Q9H7S9 590 aaPredicted RBP18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 PPCSQ9HAB8 311 aa18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 OXSMQ9NWU1 459 aa18.23■□□□□ 0.51
PDZRN3-202ENST00000308537 GUCY1B2O75343 617 aa18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 P04436 131 aa18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 TPOP07202 933 aa18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 IL3P08700 152 aa18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 ESRRAP11474 423 aaPredicted RBP18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 NT5EP21589 574 aa18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 HMOX2P30519 316 aa18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 NAGLUP54802 743 aa18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 PLGLB1Q02325 96 aa18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 LTB4RQ15722 352 aa18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 FNDC7Q5VTL7 733 aa18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 SCIMPQ6UWF3 145 aa18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 LRRC25Q8N386 305 aaPredicted RBP18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 OR7G1Q8NGA0 311 aa18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 OR2W6PQ8NHA6 318 aa18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 NXF5Q9H1B4 397 aaKnown RBP18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 MID1IP1Q9NPA3 183 aa18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 NMRK1Q9NWW6 199 aa18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 DLGAP4Q9Y2H0 992 aa18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 STK38LQ9Y2H1 464 aa18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 CCL27Q9Y4X3 112 aa18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 SEC23IPQ9Y6Y8 1000 aaKnown RBP18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 INTS1Q8N201 2190 aaKnown RBP18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 HCFC1P51610 2035 aa18.22■□□□□ 0.51
PDZRN3-202ENST00000308537 POLQO75417 2590 aa18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 PDZD2O15018 2839 aa18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 ANKRD33BA6NCL7 494 aa18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 SMIM23A6NLE4 172 aa18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 ACOT7O00154 380 aa18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 PCDH7O60245 1069 aa18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 ZNF500O60304 480 aaPredicted RBP18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 CDH16O75309 829 aa18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 TRIM3O75382 744 aaPredicted RBP18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 ERAL1O75616 437 aaKnown RBP18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 LRATO95237 230 aa18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 MYL2P10916 166 aa18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 CSNK2A2P19784 350 aaPredicted RBP18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 HTR1EP28566 365 aa18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 SERPINB3P29508 390 aa18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 TIA1P31483 386 aaKnown RBP eCLIP18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 FBXW4P57775 412 aa18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 EXOSC7Q15024 291 aaKnown RBP18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 CCDC153Q494R4 210 aa18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 TRMT12Q53H54 448 aaKnown RBP18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 ZNF628Q5EBL2 1059 aa18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 BICRALQ6AI39 1079 aa18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 C4orf33Q8N1A6 199 aa18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 VWA5B2Q8N398 1253 aa18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 CCNYL1Q8N7R7 359 aa18.21■□□□□ 0.51
PDZRN3-202ENST00000308537 ADCY4Q8NFM4 1077 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms