RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 UGT2B7P16662 529 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 NDUFV2P19404 249 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 CBLP22681 906 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 PBX2P40425 430 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 RELAQ04206 551 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 PPP1R3AQ16821 1122 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 CYP27C1Q4G0S4 372 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 PGAP1Q75T13 922 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 ARL5BQ96KC2 179 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 SIX2Q9NPC8 291 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 BACE2Q9Y5Z0 518 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 B3GALT1Q9Y5Z6 326 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 CACNG2Q9Y698 323 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 ELOAQ14241 798 aaKnown RBP13.28□□□□□ -0.28
CSPG4-201ENST00000308508 GRIN2CQ14957 1233 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 PLEKHS1Q5SXH7 462 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 TMEM164Q5U3C3 297 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 DPY19L2P1Q6NXN4 242 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 FKBP10Q96AY3 582 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 COQ4Q9Y3A0 265 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 AWAT2Q6E213 333 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 SLC18B1Q6NT16 456 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 LRFN4Q6PJG9 635 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 GDPGP1Q6ZNW5 385 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 TMEM173Q86WV6 379 aaPredicted RBP13.28□□□□□ -0.28
CSPG4-201ENST00000308508 NPAS4Q8IUM7 802 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 TEX26Q8N6G2 289 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 HAS2Q92819 552 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 PLCXD1Q9NUJ7 323 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 SMOXQ9NWM0 555 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 A0A0U1RQK1 487 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 RAB19A4D1S5 217 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 J3KR12 359 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 B4GALT2O60909 372 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 RHOP08100 348 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 ETFAP13804 333 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 FUT2Q10981 343 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 ALDH16A1Q8IZ83 802 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 CMTM1Q8IZ96 169 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 OR4K1Q8NGD4 311 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 TFGQ92734 400 aaPredicted RBP13.28□□□□□ -0.28
CSPG4-201ENST00000308508 KRBA1A5PL33 1030 aa13.27□□□□□ -0.28
CSPG4-201ENST00000308508 INPPL1O15357 1258 aa13.27□□□□□ -0.28
CSPG4-201ENST00000308508 SULT1B1O43704 296 aa13.27□□□□□ -0.28
CSPG4-201ENST00000308508 SLC25A11Q02978 314 aaKnown RBP13.27□□□□□ -0.28
CSPG4-201ENST00000308508 SGPP2Q8IWX5 399 aa13.27□□□□□ -0.28
CSPG4-201ENST00000308508 TRIB3Q96RU7 358 aa13.27□□□□□ -0.28
CSPG4-201ENST00000308508 ACTR10Q9NZ32 417 aa13.27□□□□□ -0.28
CSPG4-201ENST00000308508 TYROBPO43914 113 aa13.27□□□□□ -0.28
CSPG4-201ENST00000308508 FOXD2O60548 495 aaPredicted RBP13.27□□□□□ -0.28
CSPG4-201ENST00000308508 CNOT4O95628 575 aaKnown RBP13.27□□□□□ -0.28
CSPG4-201ENST00000308508 MAP1SQ66K74 1059 aaPredicted RBP13.27□□□□□ -0.28
CSPG4-201ENST00000308508 RAB8BQ92930 207 aa13.27□□□□□ -0.28
CSPG4-201ENST00000308508 GLTPQ9NZD2 209 aa13.27□□□□□ -0.28
CSPG4-201ENST00000308508 PAFAH1B3Q15102 231 aaKnown RBP13.27□□□□□ -0.29
CSPG4-201ENST00000308508 PAPD4Q6PIY7 484 aaKnown RBP13.27□□□□□ -0.29
CSPG4-201ENST00000308508 CLEC20AQ6ZU45 233 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 FAM83FQ8NEG4 500 aaPredicted RBP13.27□□□□□ -0.29
CSPG4-201ENST00000308508 OR7G1Q8NGA0 311 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 SYNGR4O95473 234 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 DCNP07585 359 aaKnown RBP13.27□□□□□ -0.29
CSPG4-201ENST00000308508 FHP07954 510 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 CD9P21926 228 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 CAV2P51636 162 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 NR0B1P51843 470 aaKnown RBP13.27□□□□□ -0.29
CSPG4-201ENST00000308508 PROX2Q3B8N5 592 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 ERN2Q76MJ5 926 aaKnown RBP13.27□□□□□ -0.29
CSPG4-201ENST00000308508 KLK6Q92876 244 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 GLYATL1Q969I3 302 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 SOX17Q9H6I2 414 aaPredicted RBP13.27□□□□□ -0.29
CSPG4-201ENST00000308508 PIGVQ9NUD9 493 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 GPR83Q9NYM4 423 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 SLC2A6Q9UGQ3 507 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 SCAF4O95104 1147 aaKnown RBP13.27□□□□□ -0.29
CSPG4-201ENST00000308508 DRD5P21918 477 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 SEMG2Q02383 582 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 ECH1Q13011 328 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 DESI1Q6ICB0 168 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 NRROSQ86YC3 692 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 DDX1Q92499 740 aaKnown RBP13.27□□□□□ -0.29
CSPG4-201ENST00000308508 RRAGCQ9HB90 399 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 OARD1Q9Y530 152 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 SERPINA7P05543 415 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 MOGSQ13724 837 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 MSS51Q4VC12 460 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 ZFAND4Q86XD8 727 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 RHEBL1Q8TAI7 183 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 KCNJ9Q92806 393 aa13.27□□□□□ -0.29
CSPG4-201ENST00000308508 NLE1Q9NVX2 485 aaPredicted RBP13.27□□□□□ -0.29
CSPG4-201ENST00000308508 B4DGG1 531 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 SCAMP1O15126 338 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 KLK3P07288 261 aaPredicted RBP13.26□□□□□ -0.29
CSPG4-201ENST00000308508 PRSS3P35030 304 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 KCNC1P48547 511 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 KIAA1211LQ6NV74 962 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 TMPPEQ6ZT21 453 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.26□□□□□ -0.29
CSPG4-201ENST00000308508 WDR20Q8TBZ3 569 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 OR51J1Q9H342 316 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 DMAC2Q9NW81 257 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms