RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 TSTQ16762 297 aaKnown RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 WSCD1Q658N2 575 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 ZNF611Q8N823 705 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 OR10A6Q8NH74 314 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 SLC22A17Q8WUG5 538 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 PHYHIPQ92561 330 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 CELF6Q96J87 481 aaKnown RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 CMTM3Q96MX0 182 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 SECISBP2Q96T21 854 aaKnown RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 GPR21Q99679 349 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 SMOQ99835 787 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 WDR26Q9H7D7 661 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 MYNNQ9NPC7 610 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 FLRT1Q9NZU1 646 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 RNF215Q9Y6U7 377 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 DAPL1A0PJW8 107 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 NEMP2A6NFY4 417 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 FAAHO00519 579 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 TGOLN2O43493 480 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 F2P00734 622 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 C1QBP02746 253 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 SBK2P0C263 348 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 JUPP14923 745 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 TDGQ13569 410 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 FAM174BQ3ZCQ3 159 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 GLB1LQ6UWU2 654 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 DLEU7Q6UYE1 221 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 IDO2Q6ZQW0 420 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 OTOP3Q7RTS5 596 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 MYLIPQ8WY64 445 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 SMIM12Q96EX1 92 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 SUCNR1Q9BXA5 334 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.12□□□□□ -1.43
VPS35-201ENST00000299138 ARFGEF1Q9Y6D6 1849 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 A0A1W2PRB8 838 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 FOXD2O60548 495 aaPredicted RBP6.12□□□□□ -1.43
VPS35-201ENST00000299138 OR4F21O95013 312 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 PCDH8O95206 1070 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 HMGN1P05114 100 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 TYRP14679 529 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 CHATP28329 748 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 NSG1P42857 185 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 CCR10P46092 362 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 HTR3AP46098 478 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 EPHA4P54764 986 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 NRLP54845 237 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 DIO3P55073 304 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 SELENBP1Q13228 472 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 ODF4Q2M2E3 257 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 PDZD11Q5EBL8 140 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 GCNT6Q5T4J0 391 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 ARMC12Q5T9G4 340 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 ANKRD54Q6NXT1 300 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 HFE2Q6ZVN8 426 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 CADM2Q8N3J6 435 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 OR10G2Q8NGC3 310 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 ZNF675Q8TD23 568 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 HIST1H2AAQ96QV6 131 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 C2orf49Q9BVC5 232 aaPredicted RBP6.12□□□□□ -1.43
VPS35-201ENST00000299138 MED17Q9NVC6 651 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 SDHAF2Q9NX18 166 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 NPFFR2Q9Y5X5 522 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 GXYLT2A0PJZ3 443 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 MEIS3P2A8K0S8 358 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 H7C417 338 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 FFAR2O15552 330 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 SOCS5O75159 536 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 STK17BO94768 372 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 NDUFV1P49821 464 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 RPL23AP62750 156 aaKnown RBP6.12□□□□□ -1.43
VPS35-201ENST00000299138 SP2Q02086 613 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 PON3Q15166 354 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 SF3A2Q15428 464 aaKnown RBP6.12□□□□□ -1.43
VPS35-201ENST00000299138 TAF1CQ15572 869 aaPredicted RBP6.12□□□□□ -1.43
VPS35-201ENST00000299138 ESCO2Q56NI9 601 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 ARSJQ5FYB0 599 aaPredicted RBP6.12□□□□□ -1.43
VPS35-201ENST00000299138 DCST1Q5T197 706 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 SYPL2Q5VXT5 272 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 KIAA1161Q6NSJ0 714 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 NCEH1Q6PIU2 408 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 RHOUQ7L0Q8 258 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 DCUN1D3Q8IWE4 304 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 ZBTB2Q8N680 514 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 PNLDC1Q8NA58 520 aaKnown RBP6.12□□□□□ -1.43
VPS35-201ENST00000299138 ZFAND1Q8TCF1 268 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 GLYATL2Q8WU03 294 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 EDEM1Q92611 657 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 MGLLQ99685 303 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 TMEM100Q9NV29 134 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 SAGE1Q9NXZ1 904 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 TAS2R10Q9NYW0 307 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 MRPL15Q9P015 296 aaKnown RBP6.12□□□□□ -1.43
VPS35-201ENST00000299138 EFCAB7A8K855 629 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 ZBTB42B2RXF5 422 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 M0QZQ0 153 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 CBX4O00257 560 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 SULT1C2O00338 296 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 ANKRD28O15084 1053 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 INSIG1O15503 277 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 STSP08842 583 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms