RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 EHD3Q9NZN3 535 aa18.94■□□□□ 0.62
VPS53-201ENST00000291074 A4GNTQ9UNA3 340 aa18.94■□□□□ 0.62
VPS53-201ENST00000291074 KCNE3Q9Y6H6 103 aa18.94■□□□□ 0.62
VPS53-201ENST00000291074 H3BN98 237 aa18.94■□□□□ 0.62
VPS53-201ENST00000291074 DNTTP04053 509 aa18.94■□□□□ 0.62
VPS53-201ENST00000291074 HMGN2P05204 90 aaKnown RBP18.94■□□□□ 0.62
VPS53-201ENST00000291074 LAMP2P13473 410 aa18.94■□□□□ 0.62
VPS53-201ENST00000291074 OSMP13725 252 aa18.94■□□□□ 0.62
VPS53-201ENST00000291074 AK4P27144 223 aaPredicted RBP18.94■□□□□ 0.62
VPS53-201ENST00000291074 IRF3Q14653 427 aa18.94■□□□□ 0.62
VPS53-201ENST00000291074 ARMCX4Q5H9R4 360 aa18.94■□□□□ 0.62
VPS53-201ENST00000291074 PGBD2Q6P3X8 592 aa18.94■□□□□ 0.62
VPS53-201ENST00000291074 ZNF554Q86TJ5 538 aa18.94■□□□□ 0.62
VPS53-201ENST00000291074 ELSPBP1Q96BH3 223 aa18.94■□□□□ 0.62
VPS53-201ENST00000291074 DHRS1Q96LJ7 313 aa18.94■□□□□ 0.62
VPS53-201ENST00000291074 FBXO8Q9NRD0 319 aa18.94■□□□□ 0.62
VPS53-201ENST00000291074 TBC1D29Q9UFV1 150 aa18.94■□□□□ 0.62
VPS53-201ENST00000291074 ENOPH1Q9UHY7 261 aa18.94■□□□□ 0.62
VPS53-201ENST00000291074 ISM1B1AKI9 464 aa18.93■□□□□ 0.62
VPS53-201ENST00000291074 H0Y8X5 98 aa18.93■□□□□ 0.62
VPS53-201ENST00000291074 TLR4O00206 839 aa18.93■□□□□ 0.62
VPS53-201ENST00000291074 CACNB4O00305 520 aaPredicted RBP18.93■□□□□ 0.62
VPS53-201ENST00000291074 ENTPD6O75354 484 aa18.93■□□□□ 0.62
VPS53-201ENST00000291074 SERPINB7O75635 380 aa18.93■□□□□ 0.62
VPS53-201ENST00000291074 MRM1Q6IN84 353 aaKnown RBP18.93■□□□□ 0.62
VPS53-201ENST00000291074 FAM46DQ8NEK8 389 aa18.93■□□□□ 0.62
VPS53-201ENST00000291074 OR2L5Q8NG80 312 aa18.93■□□□□ 0.62
VPS53-201ENST00000291074 OR4E2Q8NGC2 313 aa18.93■□□□□ 0.62
VPS53-201ENST00000291074 RMI1Q9H9A7 625 aa18.93■□□□□ 0.62
VPS53-201ENST00000291074 DNAJC27Q9NZQ0 273 aa18.93■□□□□ 0.62
VPS53-201ENST00000291074 TRBV23OR9-2A0A075B6M9 112 aa18.93■□□□□ 0.62
VPS53-201ENST00000291074 FAAHO00519 579 aa18.93■□□□□ 0.62
VPS53-201ENST00000291074 ADAM23O75077 832 aa18.93■□□□□ 0.62
VPS53-201ENST00000291074 TARDBPQ13148 414 aaKnown RBP eCLIP18.93■□□□□ 0.62
VPS53-201ENST00000291074 RD3Q7Z3Z2 195 aa18.93■□□□□ 0.62
VPS53-201ENST00000291074 BCDIN3DQ7Z5W3 292 aaKnown RBP18.93■□□□□ 0.62
VPS53-201ENST00000291074 CLN6Q9NWW5 311 aa18.93■□□□□ 0.62
VPS53-201ENST00000291074 PCDHGA4Q9Y5G9 962 aa18.93■□□□□ 0.62
VPS53-201ENST00000291074 CBFA2T3O75081 653 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 UGT2B17O75795 530 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 DBTP11182 482 aaKnown RBP18.92■□□□□ 0.62
VPS53-201ENST00000291074 PPP2R1BP30154 601 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 KHKP50053 298 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 UGT2B15P54855 530 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 ANKRD54Q6NXT1 300 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 IQCF1Q8N6M8 205 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 OR6T1Q8NGN1 323 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 MCFD2Q8NI22 146 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 S100ZQ8WXG8 99 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 EQTNQ9NQ60 294 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 DAPK2Q9UIK4 370 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 ACAD8Q9UKU7 415 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 MGAT4BQ9UQ53 548 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 PRSS38A1L453 326 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 BOLA2-SMG1P6H3BVE0 249 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 ZW10O43264 779 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 NTSR1P30989 418 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 HYAL1Q12794 435 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 MED22Q15528 200 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 TPRG1LQ5T0D9 272 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 PODNL1Q6PEZ8 512 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 MEX3DQ86XN8 651 aaKnown RBP18.92■□□□□ 0.62
VPS53-201ENST00000291074 CCL4L1Q8NHW4 92 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 CHCHD6Q9BRQ6 235 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 FUZQ9BT04 418 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 CENPOQ9BU64 300 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 PRR14Q9BWN1 585 aa18.92■□□□□ 0.62
VPS53-201ENST00000291074 POLR2J3Q9H1A7 115 aaKnown RBP18.92■□□□□ 0.62
VPS53-201ENST00000291074 BTN3A3O00478 584 aa18.91■□□□□ 0.62
VPS53-201ENST00000291074 RGS6P49758 472 aa18.91■□□□□ 0.62
VPS53-201ENST00000291074 XKP51811 444 aa18.91■□□□□ 0.62
VPS53-201ENST00000291074 PPP2R2DQ66LE6 453 aa18.91■□□□□ 0.62
VPS53-201ENST00000291074 KRT73Q86Y46 540 aa18.91■□□□□ 0.62
VPS53-201ENST00000291074 IL17RCQ8NAC3 791 aa18.91■□□□□ 0.62
VPS53-201ENST00000291074 KCT2Q8NC54 265 aa18.91■□□□□ 0.62
VPS53-201ENST00000291074 RASSF5Q8WWW0 418 aa18.91■□□□□ 0.62
VPS53-201ENST00000291074 OR1E3Q8WZA6 343 aa18.91■□□□□ 0.62
VPS53-201ENST00000291074 DSN1Q9H410 356 aa18.91■□□□□ 0.62
VPS53-201ENST00000291074 IFT52Q9Y366 437 aa18.91■□□□□ 0.62
VPS53-201ENST00000291074 A0A1W2PQF6 199 aa18.91■□□□□ 0.62
VPS53-201ENST00000291074 TNNI3P19429 210 aa18.91■□□□□ 0.62
VPS53-201ENST00000291074 AHRP35869 848 aa18.91■□□□□ 0.62
VPS53-201ENST00000291074 BUD31P41223 144 aaPredicted RBP18.91■□□□□ 0.62
VPS53-201ENST00000291074 ILKQ13418 452 aa18.91■□□□□ 0.62
VPS53-201ENST00000291074 GPAT3Q53EU6 434 aa18.91■□□□□ 0.62
VPS53-201ENST00000291074 LSRQ86X29 649 aaPredicted RBP18.91■□□□□ 0.62
VPS53-201ENST00000291074 OR9A2Q8NGT5 310 aa18.91■□□□□ 0.62
VPS53-201ENST00000291074 WDR36Q8NI36 951 aaKnown RBP18.91■□□□□ 0.62
VPS53-201ENST00000291074 OR2M4Q96R27 311 aa18.91■□□□□ 0.62
VPS53-201ENST00000291074 CES1P1Q9UKY3 287 aa18.91■□□□□ 0.62
VPS53-201ENST00000291074 ENTPD4Q9Y227 616 aa18.91■□□□□ 0.62
VPS53-201ENST00000291074 FUOMA2VDF0 154 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 SH3D21A4FU49 640 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 EFCAB10A6NFE3 127 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 TTC36A6NLP5 189 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 OXSR1O95747 527 aaPredicted RBP18.9■□□□□ 0.62
VPS53-201ENST00000291074 RPLP0P05388 317 aaKnown RBP18.9■□□□□ 0.62
VPS53-201ENST00000291074 ASGR2P07307 311 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 HOXB2P14652 356 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 CMPK1P30085 196 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms