RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 CALHM2Q9HA72 323 aa13.41□□□□□ -0.26
PNKP-218ENST00000625299 ADAM21Q9UKJ8 722 aa13.41□□□□□ -0.26
PNKP-218ENST00000625299 ZANQ9Y493 2812 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 C2orf92A0A1B0GVN3 265 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 ANKRD33BA6NCL7 494 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 CAPN14A8MX76 684 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 H0Y3Z8 333 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 DNALI1O14645 258 aaPredicted RBP13.4□□□□□ -0.26
PNKP-218ENST00000625299 STK16O75716 305 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 SCELO95171 688 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 SNX4O95219 450 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 TLX1P31314 330 aaPredicted RBP13.4□□□□□ -0.26
PNKP-218ENST00000625299 SOX18P35713 384 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 RAP1GDS1P52306 607 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 NAGLUP54802 743 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 SLC37A1P57057 533 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 TNFRSF17Q02223 184 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 SRYQ05066 204 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 CHIT1Q13231 466 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 LAPTM5Q13571 262 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 DDX39BQ13838 428 aaKnown RBP13.4□□□□□ -0.26
PNKP-218ENST00000625299 CYP1B1Q16678 543 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 TMEM35AQ53FP2 167 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 NHSL2Q5HYW2 709 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 FNDC7Q5VTL7 733 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 HLA-DQA1Q5Y7H0 255 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 CAPN12Q6ZSI9 719 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 ZC3HC1Q86WB0 502 aaKnown RBP13.4□□□□□ -0.26
PNKP-218ENST00000625299 GPSM1Q86YR5 675 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 PRR22Q8IZ63 422 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 ST13P4Q8IZP2 240 aaPredicted RBP13.4□□□□□ -0.26
PNKP-218ENST00000625299 GCNT2Q8N0V5 402 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 SPPL2AQ8TCT8 520 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 TANKQ92844 425 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 INTS12Q96CB8 462 aaKnown RBP13.4□□□□□ -0.26
PNKP-218ENST00000625299 PIP5K1AQ99755 562 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 TUBA1CQ9BQE3 449 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 SFXN3Q9BWM7 321 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 OR51B5Q9H339 312 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 NDRG3Q9UGV2 375 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 TRPS1Q9UHF7 1281 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 ATRQ13535 2644 aa13.4□□□□□ -0.26
PNKP-218ENST00000625299 EXPH5Q8NEV8 1989 aa13.4□□□□□ -0.27
PNKP-218ENST00000625299 FBN1P35555 2871 aaKnown RBP13.39□□□□□ -0.27
PNKP-218ENST00000625299 GLOD5A6NK44 160 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 OR6C76A6NM76 312 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 GOLGA6L6A8MZA4 724 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 SSTR4P31391 388 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 GCKP35557 465 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 SLC12A2P55011 1212 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 CBLBQ13191 982 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 SETDB1Q15047 1291 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 SPRED3Q2MJR0 410 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 KHDRBS2Q5VWX1 349 aaKnown RBP13.39□□□□□ -0.27
PNKP-218ENST00000625299 OR4C11Q6IEV9 310 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 SULT1C3Q6IMI6 304 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 GPR180Q86V85 440 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 RNF175Q8N4F7 328 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 FAM83FQ8NEG4 500 aaPredicted RBP13.39□□□□□ -0.27
PNKP-218ENST00000625299 WDR34Q96EX3 536 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 PIK3IP1Q96FE7 263 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 NAP1L3Q99457 506 aaPredicted RBP13.39□□□□□ -0.27
PNKP-218ENST00000625299 PELOQ9BRX2 385 aaKnown RBP13.39□□□□□ -0.27
PNKP-218ENST00000625299 ANGPTL4Q9BY76 406 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 SNX15Q9NRS6 342 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 MS4A12Q9NXJ0 267 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 CD274Q9NZQ7 290 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 PHF11Q9UIL8 331 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 TESMINQ9Y4I5 508 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 NPFFR2Q9Y5X5 522 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 IKBKGQ9Y6K9 419 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 MED12LQ86YW9 2145 aa13.39□□□□□ -0.27
PNKP-218ENST00000625299 WASHC1A8K0Z3 465 aa13.38□□□□□ -0.27
PNKP-218ENST00000625299 PGRMC1O00264 195 aaKnown RBP13.38□□□□□ -0.27
PNKP-218ENST00000625299 SNPHO15079 494 aa13.38□□□□□ -0.27
PNKP-218ENST00000625299 CLPSP04118 112 aa13.38□□□□□ -0.27
PNKP-218ENST00000625299 S100BP04271 92 aaPredicted RBP13.38□□□□□ -0.27
PNKP-218ENST00000625299 EPORP19235 508 aa13.38□□□□□ -0.27
PNKP-218ENST00000625299 GGT5P36269 586 aa13.38□□□□□ -0.27
PNKP-218ENST00000625299 BUD31P41223 144 aaPredicted RBP13.38□□□□□ -0.27
PNKP-218ENST00000625299 CASP3P42574 277 aa13.38□□□□□ -0.27
PNKP-218ENST00000625299 FNTAP49354 379 aa13.38□□□□□ -0.27
PNKP-218ENST00000625299 TMED10P49755 219 aaKnown RBP13.38□□□□□ -0.27
PNKP-218ENST00000625299 DIO3P55073 304 aa13.38□□□□□ -0.27
PNKP-218ENST00000625299 HNRNPH2P55795 449 aaKnown RBP13.38□□□□□ -0.27
PNKP-218ENST00000625299 NRG3P56975 720 aa13.38□□□□□ -0.27
PNKP-218ENST00000625299 RPP38P78345 283 aaKnown RBP13.38□□□□□ -0.27
PNKP-218ENST00000625299 BIKQ13323 160 aa13.38□□□□□ -0.27
PNKP-218ENST00000625299 KBTBD12Q3ZCT8 623 aa13.38□□□□□ -0.27
PNKP-218ENST00000625299 MED27Q6P2C8 311 aa13.38□□□□□ -0.27
PNKP-218ENST00000625299 ANGPTL8Q6UXH0 198 aa13.38□□□□□ -0.27
PNKP-218ENST00000625299 ANKMY2Q8IV38 441 aa13.38□□□□□ -0.27
PNKP-218ENST00000625299 PDIK1LQ8N165 341 aa13.38□□□□□ -0.27
PNKP-218ENST00000625299 ZPLD1Q8TCW7 415 aa13.38□□□□□ -0.27
PNKP-218ENST00000625299 CMTM7Q96FZ5 175 aa13.38□□□□□ -0.27
PNKP-218ENST00000625299 PBKQ96KB5 322 aa13.38□□□□□ -0.27
PNKP-218ENST00000625299 TM9SF2Q99805 663 aa13.38□□□□□ -0.27
PNKP-218ENST00000625299 DERL2Q9GZP9 239 aa13.38□□□□□ -0.27
PNKP-218ENST00000625299 METTL7AQ9H8H3 244 aa13.38□□□□□ -0.27
PNKP-218ENST00000625299 KLHL28Q9NXS3 571 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 110.7 ms