RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 SLC5A8Q8N695 610 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 DNAJB8Q8NHS0 232 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 CLHC1Q8NHS4 586 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 FBXO27Q8NI29 283 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 ADAMTS18Q8TE60 1221 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 SLC7A6OSQ96CW6 309 aaPredicted RBP11.82□□□□□ -0.52
PNKP-217ENST00000625216 PTCHD1Q96NR3 888 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 F2RL3Q96RI0 385 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 SORBS1Q9BX66 1292 aaKnown RBP11.82□□□□□ -0.52
PNKP-217ENST00000625216 ZNF717Q9BY31 904 aaPredicted RBP11.82□□□□□ -0.52
PNKP-217ENST00000625216 RBCK1Q9BYM8 510 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 KLHL31Q9H511 634 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 PRDM9Q9NQV7 894 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 ZIM2Q9NZV7 527 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 CCDC167Q9P0B6 97 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 EIF3LQ9Y262 564 aaKnown RBP11.82□□□□□ -0.52
PNKP-217ENST00000625216 TMED5Q9Y3A6 229 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 MMACHCQ9Y4U1 282 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 PCDHGB6Q9Y5F9 930 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 SHANK1Q9Y566 2161 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 DOPEY2Q9Y3R5 2298 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 DOCK10Q96BY6 2186 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 CROCCQ5TZA2 2017 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 NUP210LQ5VU65 1888 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 RTCAO00442 366 aaKnown RBP11.81□□□□□ -0.52
PNKP-217ENST00000625216 CLDN4O14493 209 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 PLPP1O14494 284 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 PCDH7O60245 1069 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 PRAMEF2O60811 474 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 SEMA7AO75326 666 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 SEMA3DO95025 777 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 B3GALT4O96024 378 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 ESRRAP11474 423 aaPredicted RBP11.81□□□□□ -0.52
PNKP-217ENST00000625216 PRPS2P11908 318 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 CAPN3P20807 821 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 MAPK1P28482 360 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 SLC26A5P58743 744 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 OLR1P78380 273 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 TGM3Q08188 693 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 CUL3Q13618 768 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 SPIN4Q56A73 249 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 DEPDC1Q5TB30 811 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 RINLQ6ZS11 566 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 UBE3DQ7Z6J8 389 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 CA13Q8N1Q1 262 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 SRFBP1Q8NEF9 429 aaKnown RBP11.81□□□□□ -0.52
PNKP-217ENST00000625216 OR2L5Q8NG80 312 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 NUDT8Q8WV74 236 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 TSLPQ969D9 159 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 MS4A6EQ96DS6 147 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 METTL2AQ96IZ6 378 aaKnown RBP11.81□□□□□ -0.52
PNKP-217ENST00000625216 TSSK3Q96PN8 268 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 SLX1AQ9BQ83 275 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 REXO4Q9GZR2 422 aaKnown RBP11.81□□□□□ -0.52
PNKP-217ENST00000625216 SLC52A3Q9NQ40 469 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 OLAHQ9NV23 265 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 MRGBPQ9NV56 204 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 SIRT5Q9NXA8 310 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 BAIAP2L1Q9UHR4 511 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 SLC5A6Q9Y289 635 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 SCN3AQ9NY46 2000 aa11.81□□□□□ -0.52
PNKP-217ENST00000625216 IGKV3D-11A0A0A0MRZ8 115 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 LOC100653049A0A140TA62 436 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 TCRBV16S1A1N1A0A5B0 115 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 ASPDHA6ND91 283 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 WIPF3A6NGB9 483 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 FBP2O00757 339 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 ERI3O43414 337 aaKnown RBP11.8□□□□□ -0.52
PNKP-217ENST00000625216 B3GALT2O43825 422 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 KRT34O76011 436 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 RASAL1O95294 804 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 CRYABP02511 175 aaKnown RBP11.8□□□□□ -0.52
PNKP-217ENST00000625216 PTX3P26022 381 aaPredicted RBP11.8□□□□□ -0.52
PNKP-217ENST00000625216 BSGP35613 385 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 HSD17B7P56937 341 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 DMTNQ08495 405 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 CYLC2Q14093 348 aaPredicted RBP11.8□□□□□ -0.52
PNKP-217ENST00000625216 RCAN2Q14206 197 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 RPS6KA2Q15349 733 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 MAPRE2Q15555 327 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 ZNF324BQ6AW86 544 aaPredicted RBP11.8□□□□□ -0.52
PNKP-217ENST00000625216 REP15Q6BDI9 236 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 GALNT18Q6P9A2 607 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 TRIM40Q6P9F5 258 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 KRTCAP2Q8N6L1 136 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 HORMAD2Q8N7B1 307 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 C7orf57Q8NEG2 295 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 RP9Q8TA86 221 aaKnown RBP11.8□□□□□ -0.52
PNKP-217ENST00000625216 ELP5Q8TE02 316 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 RCN3Q96D15 328 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 CMTM5Q96DZ9 223 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 EGLN2Q96KS0 407 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 QRFPRQ96P65 431 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 SERINC2Q96SA4 455 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 UTP23Q9BRU9 249 aaKnown RBP11.8□□□□□ -0.52
PNKP-217ENST00000625216 ROGDIQ9GZN7 287 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 NMRK1Q9NWW6 199 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 MRPS33Q9Y291 106 aaKnown RBP11.8□□□□□ -0.52
PNKP-217ENST00000625216 POLEQ07864 2286 aa11.8□□□□□ -0.52
PNKP-217ENST00000625216 A0A0G2JN53 185 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms