RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 RGS9BPQ6ZS82 235 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 LARP4Q71RC2 724 aaKnown RBP eCLIP15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 MAVSQ7Z434 540 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 CCDC116Q8IYX3 515 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 ZADH2Q8N4Q0 377 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 ARFGAP2Q8N6H7 521 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 OR8K3Q8NH51 312 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 SUN3Q8TAQ9 357 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 THAP3Q8WTV1 239 aaPredicted RBP15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 CDCP1Q9H5V8 836 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 REEP4Q9H6H4 257 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 WDR55Q9H6Y2 383 aaPredicted RBP15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 GIMAP4Q9NUV9 329 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 NOP53Q9NZM5 478 aaKnown RBP15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 ENTPD4Q9Y227 616 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 EIF3LQ9Y262 564 aaKnown RBP15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 TMEM200CA6NKL6 621 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 EIF4E1BA6NMX2 242 aaKnown RBP15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 MYO1GB0I1T2 1018 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 POLR3GO15318 223 aaPredicted RBP15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 TBX19O60806 448 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 ZFAND5O76080 213 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 WDPCPO95876 746 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 CLPSP04118 112 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 G6PDP11413 515 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 LBPP18428 481 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 EPHA3P29320 983 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 PTGER1P34995 402 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 SOX18P35713 384 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 MLF1P58340 268 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 RNF4P78317 190 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 MGAT2Q10469 447 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 FUT7Q11130 342 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 MAP4K2Q12851 820 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 KLRB1Q12918 225 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 PDE7AQ13946 482 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 LTB4RQ15722 352 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 BEST3Q8N1M1 668 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 ZNF843Q8N446 348 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 TEX19Q8NA77 164 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 ADCY4Q8NFM4 1077 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 HAS2Q92819 552 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 MTERF3Q96E29 417 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 RNF32Q9H0A6 362 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 PLA2G3Q9NZ20 509 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 MAT2BQ9NZL9 334 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 CSAG2Q9Y5P2 127 aa15.38■□□□□ 0.05
CCDC28A-202ENST00000611852 GOLGA8QA0A0J9YX86 632 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 DYTNA2CJ06 578 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 GOLGA8OA6NCC3 632 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 GABRR3A8MPY1 467 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 GOLGA8NF8WBI6 632 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 S1PR1P21453 382 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 SSTR4P31391 388 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 MPIP34949 423 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 DIO3P55073 304 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 SLC37A1P57057 533 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 NADK2Q4G0N4 442 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 C6orf163Q5TEZ5 329 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 OGFOD2Q6N063 350 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 ANKRD26P1Q6NSI1 321 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 FAM111BQ6SJ93 734 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 FAM47EQ6ZV65 393 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 C9orf40Q8IXQ3 194 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 VWA5B2Q8N398 1253 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 PPCDCQ96CD2 204 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 CTHRC1Q96CG8 243 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 MAELQ96JY0 434 aaKnown RBP15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 BBS4Q96RK4 519 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 MFRPQ9BY79 579 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 BRINP2Q9C0B6 783 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 ZNF639Q9UID6 485 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 USH1CQ9Y6N9 552 aa15.37■□□□□ 0.05
CCDC28A-202ENST00000611852 CFAP46Q8IYW2 2715 aa15.36■□□□□ 0.05
CCDC28A-202ENST00000611852 SCAMP2O15127 329 aaKnown RBP15.36■□□□□ 0.05
CCDC28A-202ENST00000611852 F10P00742 488 aa15.36■□□□□ 0.05
CCDC28A-202ENST00000611852 ARG2P78540 354 aa15.36■□□□□ 0.05
CCDC28A-202ENST00000611852 MRPS35P82673 323 aaKnown RBP15.36■□□□□ 0.05
CCDC28A-202ENST00000611852 CBX1P83916 185 aa15.36■□□□□ 0.05
CCDC28A-202ENST00000611852 MPEG1Q2M385 716 aa15.36■□□□□ 0.05
CCDC28A-202ENST00000611852 SLC9B1Q4ZJI4 515 aa15.36■□□□□ 0.05
CCDC28A-202ENST00000611852 ZNF385BQ569K4 471 aa15.36■□□□□ 0.05
CCDC28A-202ENST00000611852 ZNF628Q5EBL2 1059 aa15.36■□□□□ 0.05
CCDC28A-202ENST00000611852 SLC6A19Q695T7 634 aa15.36■□□□□ 0.05
CCDC28A-202ENST00000611852 RNF111Q6ZNA4 994 aa15.36■□□□□ 0.05
CCDC28A-202ENST00000611852 Q6ZS92 163 aa15.36■□□□□ 0.05
CCDC28A-202ENST00000611852 R3HCC1LQ7Z5L2 792 aaKnown RBP15.36■□□□□ 0.05
CCDC28A-202ENST00000611852 ZNF615Q8N8J6 731 aa15.36■□□□□ 0.05
CCDC28A-202ENST00000611852 OR9A2Q8NGT5 310 aa15.36■□□□□ 0.05
CCDC28A-202ENST00000611852 ZNF675Q8TD23 568 aa15.36■□□□□ 0.05
CCDC28A-202ENST00000611852 LIN28AQ9H9Z2 209 aaKnown RBP15.36■□□□□ 0.05
CCDC28A-202ENST00000611852 SLAMF7Q9NQ25 335 aa15.36■□□□□ 0.05
CCDC28A-202ENST00000611852 SH3BP4Q9P0V3 963 aa15.36■□□□□ 0.05
CCDC28A-202ENST00000611852 ABI3Q9P2A4 366 aa15.36■□□□□ 0.05
CCDC28A-202ENST00000611852 MYOTQ9UBF9 498 aa15.36■□□□□ 0.05
CCDC28A-202ENST00000611852 ATP6V1HQ9UI12 483 aa15.36■□□□□ 0.05
CCDC28A-202ENST00000611852 OR6C76A6NM76 312 aa15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 ITGA10O75578 1167 aa15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 PRPS1L1P21108 318 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms