RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 ACSL3O95573 720 aa16.16■□□□□ 0.18
SHKBP1-223ENST00000600552 NT5EP21589 574 aa16.16■□□□□ 0.18
SHKBP1-223ENST00000600552 SERPINB8P50452 374 aa16.16■□□□□ 0.18
SHKBP1-223ENST00000600552 CCNG1P51959 295 aa16.16■□□□□ 0.18
SHKBP1-223ENST00000600552 ART1P52961 327 aa16.16■□□□□ 0.18
SHKBP1-223ENST00000600552 DLX5P56178 289 aa16.16■□□□□ 0.18
SHKBP1-223ENST00000600552 SLC37A1P57057 533 aa16.16■□□□□ 0.18
SHKBP1-223ENST00000600552 PCDH1Q08174 1060 aa16.16■□□□□ 0.18
SHKBP1-223ENST00000600552 EBPQ15125 230 aaKnown RBP16.16■□□□□ 0.18
SHKBP1-223ENST00000600552 UBAP2Q5T6F2 1119 aaKnown RBP16.16■□□□□ 0.18
SHKBP1-223ENST00000600552 MRM1Q6IN84 353 aaKnown RBP16.16■□□□□ 0.18
SHKBP1-223ENST00000600552 ZNF717Q9BY31 904 aaPredicted RBP16.16■□□□□ 0.18
SHKBP1-223ENST00000600552 DDX31Q9H8H2 851 aaKnown RBP16.16■□□□□ 0.18
SHKBP1-223ENST00000600552 SH2D2AQ9NP31 389 aa16.16■□□□□ 0.18
SHKBP1-223ENST00000600552 TEX10Q9NXF1 929 aaPredicted RBP16.16■□□□□ 0.18
SHKBP1-223ENST00000600552 KCNN3Q9UGI6 736 aa16.16■□□□□ 0.18
SHKBP1-223ENST00000600552 CNOT11Q9UKZ1 510 aaKnown RBP16.16■□□□□ 0.18
SHKBP1-223ENST00000600552 TNPO3Q9Y5L0 923 aaKnown RBP16.16■□□□□ 0.18
SHKBP1-223ENST00000600552 CHCHD2Q9Y6H1 151 aaPredicted RBP16.16■□□□□ 0.18
SHKBP1-223ENST00000600552 TP53I11O14683 189 aa16.15■□□□□ 0.18
SHKBP1-223ENST00000600552 KLK1P06870 262 aa16.15■□□□□ 0.18
SHKBP1-223ENST00000600552 SLC35E2P0CK97 266 aa16.15■□□□□ 0.18
SHKBP1-223ENST00000600552 MASP1P48740 699 aa16.15■□□□□ 0.18
SHKBP1-223ENST00000600552 GUCY2DQ02846 1103 aa16.15■□□□□ 0.18
SHKBP1-223ENST00000600552 CUL3Q13618 768 aa16.15■□□□□ 0.18
SHKBP1-223ENST00000600552 PCBP2Q15366 365 aaKnown RBP eCLIP16.15■□□□□ 0.18
SHKBP1-223ENST00000600552 TESK1Q15569 626 aa16.15■□□□□ 0.18
SHKBP1-223ENST00000600552 SPRED3Q2MJR0 410 aa16.15■□□□□ 0.18
SHKBP1-223ENST00000600552 C6orf163Q5TEZ5 329 aa16.15■□□□□ 0.18
SHKBP1-223ENST00000600552 OR52E8Q6IFG1 317 aa16.15■□□□□ 0.18
SHKBP1-223ENST00000600552 ARSKQ6UWY0 536 aa16.15■□□□□ 0.18
SHKBP1-223ENST00000600552 ULK2Q8IYT8 1036 aa16.15■□□□□ 0.18
SHKBP1-223ENST00000600552 PLD6Q8N2A8 252 aaKnown RBP16.15■□□□□ 0.18
SHKBP1-223ENST00000600552 OR52B6Q8NGF0 335 aa16.15■□□□□ 0.18
SHKBP1-223ENST00000600552 NEIL3Q8TAT5 605 aa16.15■□□□□ 0.18
SHKBP1-223ENST00000600552 ZNF597Q96LX8 424 aa16.15■□□□□ 0.18
SHKBP1-223ENST00000600552 SERPINI1Q99574 410 aa16.15■□□□□ 0.18
SHKBP1-223ENST00000600552 DNAJB12Q9NXW2 375 aaKnown RBP16.15■□□□□ 0.18
SHKBP1-223ENST00000600552 ARHGAP21Q5T5U3 1957 aa16.15■□□□□ 0.18
SHKBP1-223ENST00000600552 OR6C76A6NM76 312 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 CAPN14A8MX76 684 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 OR7A17O14581 309 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 DIAPH2O60879 1101 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 CLPSP04118 112 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 CT62P0C5K7 136 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 GABRA1P14867 456 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 KRT15P19012 456 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 BMP5P22003 454 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 PHBP35232 272 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 XKP51811 444 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 TBL3Q12788 808 aaKnown RBP16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 DUSP8Q13202 625 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 NNATQ16517 81 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 CCNYL2Q5T2Q4 361 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 C8orf74Q6P047 294 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 CCDC91Q7Z6B0 441 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 GALNT12Q8IXK2 581 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 DND1Q8IYX4 353 aaKnown RBP16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 LRRC25Q8N386 305 aaPredicted RBP16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 L3MBTL4Q8NA19 623 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 MYRIPQ8NFW9 859 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 OR4K14Q8NGD5 310 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 WDR20Q8TBZ3 569 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 NSUN5Q96P11 429 aaKnown RBP16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 GPR78Q96P69 363 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 LRRC1Q9BTT6 524 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 MRPL1Q9BYD6 325 aaKnown RBP16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 CXorf21Q9HAI6 301 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 NINJ2Q9NZG7 142 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 BCAP29Q9UHQ4 241 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 CAMK2AQ9UQM7 478 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 SLC6A5Q9Y345 797 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 TSC22D4Q9Y3Q8 395 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 NPFFR2Q9Y5X5 522 aa16.14■□□□□ 0.17
SHKBP1-223ENST00000600552 AKAP6Q13023 2319 aa16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 KDM4EB2RXH2 506 aaPredicted RBP16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 FOXE1O00358 373 aaPredicted RBP16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 GNB5O14775 395 aa16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 UGDHO60701 494 aa16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 SMIM24O75264 130 aa16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 ALDOAP04075 364 aaKnown RBP16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 TSPAN8P19075 237 aa16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 KIR2DL3P43628 341 aa16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 ETF1P62495 437 aaKnown RBP16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 IFT88Q13099 833 aa16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 NTRK2Q16620 822 aa16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 SLC25A35Q3KQZ1 300 aa16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 TECRLQ5HYJ1 363 aa16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 RIPPLY2Q5TAB7 128 aa16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 FAM219BQ5XKK7 198 aa16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 RPS27LQ71UM5 84 aaKnown RBP16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 UHMK1Q8TAS1 419 aaKnown RBP16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 RILPQ96NA2 401 aa16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 GNRHR2Q96P88 292 aa16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 POLDIP3Q9BY77 421 aaKnown RBP16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 BRINP2Q9C0B6 783 aa16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 OR10A5Q9H207 317 aa16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 AHSPQ9NZD4 102 aa16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 L3MBTL1Q9Y468 752 aa16.13■□□□□ 0.17
SHKBP1-223ENST00000600552 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms