RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 ERVK-19Q9WJR5 959 aa18.01■□□□□ 0.47
UPF1-209ENST00000600310 HRKO00198 91 aa18■□□□□ 0.47
UPF1-209ENST00000600310 ANKRD28O15084 1053 aa18■□□□□ 0.47
UPF1-209ENST00000600310 ATXN7O15265 892 aaPredicted RBP18■□□□□ 0.47
UPF1-209ENST00000600310 VIMP08670 466 aaKnown RBP18■□□□□ 0.47
UPF1-209ENST00000600310 CT62P0C5K7 136 aa18■□□□□ 0.47
UPF1-209ENST00000600310 NTSP30990 170 aa18■□□□□ 0.47
UPF1-209ENST00000600310 SOX11P35716 441 aa18■□□□□ 0.47
UPF1-209ENST00000600310 MGAT2Q10469 447 aa18■□□□□ 0.47
UPF1-209ENST00000600310 FUT7Q11130 342 aa18■□□□□ 0.47
UPF1-209ENST00000600310 MPEG1Q2M385 716 aa18■□□□□ 0.47
UPF1-209ENST00000600310 B3GNTL1Q67FW5 361 aaPredicted RBP18■□□□□ 0.47
UPF1-209ENST00000600310 ISLR2Q6UXK2 745 aa18■□□□□ 0.47
UPF1-209ENST00000600310 SLC5A8Q8N695 610 aa18■□□□□ 0.47
UPF1-209ENST00000600310 SIRT6Q8N6T7 355 aa18■□□□□ 0.47
UPF1-209ENST00000600310 LSM14AQ8ND56 463 aaKnown RBP18■□□□□ 0.47
UPF1-209ENST00000600310 OR8K3Q8NH51 312 aa18■□□□□ 0.47
UPF1-209ENST00000600310 C9orf43Q8TAL5 461 aaPredicted RBP18■□□□□ 0.47
UPF1-209ENST00000600310 ZNF675Q8TD23 568 aa18■□□□□ 0.47
UPF1-209ENST00000600310 CTHRC1Q96CG8 243 aa18■□□□□ 0.47
UPF1-209ENST00000600310 COQ8BQ96D53 544 aa18■□□□□ 0.47
UPF1-209ENST00000600310 LMF1Q96S06 567 aa18■□□□□ 0.47
UPF1-209ENST00000600310 EBF4Q9BQW3 602 aa18■□□□□ 0.47
UPF1-209ENST00000600310 DEFB126Q9BYW3 111 aa18■□□□□ 0.47
UPF1-209ENST00000600310 DPY30Q9C005 99 aa18■□□□□ 0.47
UPF1-209ENST00000600310 TCF7L2Q9NQB0 619 aa18■□□□□ 0.47
UPF1-209ENST00000600310 FGFR1OP2Q9NVK5 253 aa18■□□□□ 0.47
UPF1-209ENST00000600310 MAT2BQ9NZL9 334 aa18■□□□□ 0.47
UPF1-209ENST00000600310 COPS7AQ9UBW8 275 aa18■□□□□ 0.47
UPF1-209ENST00000600310 ZNF451Q9Y4E5 1061 aa18■□□□□ 0.47
UPF1-209ENST00000600310 GPR45Q9Y5Y3 372 aa18■□□□□ 0.47
UPF1-209ENST00000600310 A8MUI8 341 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 K7EM74 188 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 POLR3GO15318 223 aaPredicted RBP17.99■□□□□ 0.47
UPF1-209ENST00000600310 ZFAND5O76080 213 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 PDGFAP04085 211 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 SOX18P35713 384 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 FRKP42685 505 aaPredicted RBP17.99■□□□□ 0.47
UPF1-209ENST00000600310 LTB4RQ15722 352 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 ZNF628Q5EBL2 1059 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 CPTPQ5TA50 214 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 C6orf163Q5TEZ5 329 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 TMEM198Q66K66 360 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 FAM111BQ6SJ93 734 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 HSDL2Q6YN16 418 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 CAMKMTQ7Z624 323 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 LGI4Q8N135 537 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 ARMC10Q8N2F6 343 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 VWA5B2Q8N398 1253 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 NATD1Q8N6N6 113 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 ADCY4Q8NFM4 1077 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 OR7A2PQ8NGA2 310 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 OR9A2Q8NGT5 310 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 THOC1Q96FV9 657 aaKnown RBP17.99■□□□□ 0.47
UPF1-209ENST00000600310 ZNF354BQ96LW1 612 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 AMDHD1Q96NU7 426 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 ZNF317Q96PQ6 595 aaPredicted RBP17.99■□□□□ 0.47
UPF1-209ENST00000600310 PRPF18Q99633 342 aaKnown RBP17.99■□□□□ 0.47
UPF1-209ENST00000600310 BRINP2Q9C0B6 783 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 GLIPR2Q9H4G4 154 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 NPHS2Q9NP85 383 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 SLAMF7Q9NQ25 335 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.99■□□□□ 0.47
UPF1-209ENST00000600310 ZNF639Q9UID6 485 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 TEKT2Q9UIF3 430 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 TP53TG5Q9Y2B4 290 aa17.99■□□□□ 0.47
UPF1-209ENST00000600310 SMG1Q96Q15 3661 aaKnown RBP17.98■□□□□ 0.47
UPF1-209ENST00000600310 UBDO15205 165 aa17.98■□□□□ 0.47
UPF1-209ENST00000600310 PDPK1O15530 556 aa17.98■□□□□ 0.47
UPF1-209ENST00000600310 CLPSP04118 112 aa17.98■□□□□ 0.47
UPF1-209ENST00000600310 LAMP1P11279 417 aa17.98■□□□□ 0.47
UPF1-209ENST00000600310 IDO1P14902 403 aa17.98■□□□□ 0.47
UPF1-209ENST00000600310 S1PR1P21453 382 aa17.98■□□□□ 0.47
UPF1-209ENST00000600310 SSTR4P31391 388 aa17.98■□□□□ 0.47
UPF1-209ENST00000600310 PTGER1P34995 402 aa17.98■□□□□ 0.47
UPF1-209ENST00000600310 NCBP2P52298 156 aaKnown RBP eCLIP17.98■□□□□ 0.47
UPF1-209ENST00000600310 MFAP5Q13361 173 aa17.98■□□□□ 0.47
UPF1-209ENST00000600310 LY6DQ14210 128 aa17.98■□□□□ 0.47
UPF1-209ENST00000600310 GSTA3Q16772 222 aa17.98■□□□□ 0.47
UPF1-209ENST00000600310 LACTB2Q53H82 288 aaPredicted RBP17.98■□□□□ 0.47
UPF1-209ENST00000600310 SOWAHCQ53LP3 525 aaPredicted RBP17.98■□□□□ 0.47
UPF1-209ENST00000600310 IGFL2Q6UWQ7 119 aa17.98■□□□□ 0.47
UPF1-209ENST00000600310 RPS19BP1Q86WX3 136 aaKnown RBP17.98■□□□□ 0.47
UPF1-209ENST00000600310 OR7G1Q8NGA0 311 aa17.98■□□□□ 0.47
UPF1-209ENST00000600310 RFWD2Q8NHY2 731 aa17.98■□□□□ 0.47
UPF1-209ENST00000600310 CIDECQ96AQ7 238 aaPredicted RBP17.98■□□□□ 0.47
UPF1-209ENST00000600310 ZBED6CLQ96FA7 236 aaPredicted RBP17.98■□□□□ 0.47
UPF1-209ENST00000600310 NPAS2Q99743 824 aa17.98■□□□□ 0.47
UPF1-209ENST00000600310 ACSS1Q9NUB1 689 aaPredicted RBP17.98■□□□□ 0.47
UPF1-209ENST00000600310 ATAD3AQ9NVI7 634 aa17.98■□□□□ 0.47
UPF1-209ENST00000600310 FAM53CQ9NYF3 392 aa17.98■□□□□ 0.47
UPF1-209ENST00000600310 DCTN4Q9UJW0 460 aa17.98■□□□□ 0.47
UPF1-209ENST00000600310 IGSF10Q6WRI0 2623 aa17.98■□□□□ 0.47
UPF1-209ENST00000600310 PRKNO60260 465 aaPredicted RBP17.97■□□□□ 0.47
UPF1-209ENST00000600310 SLITRK5O94991 958 aa17.97■□□□□ 0.47
UPF1-209ENST00000600310 TROVE2P10155 538 aaKnown RBP eCLIP17.97■□□□□ 0.47
UPF1-209ENST00000600310 SLC37A1P57057 533 aa17.97■□□□□ 0.47
UPF1-209ENST00000600310 RNF4P78317 190 aa17.97■□□□□ 0.47
UPF1-209ENST00000600310 MEP1AQ16819 746 aa17.97■□□□□ 0.47
UPF1-209ENST00000600310 PDCD4Q53EL6 469 aaKnown RBP17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms