RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 TEKT2Q9UIF3 430 aa18.1■□□□□ 0.49
SHKBP1-221ENST00000599833 UTS2RQ9UKP6 389 aa18.1■□□□□ 0.49
SHKBP1-221ENST00000599833 ERVK-19Q9WJR5 959 aa18.1■□□□□ 0.49
SHKBP1-221ENST00000599833 WBP11Q9Y2W2 641 aaKnown RBP18.1■□□□□ 0.49
SHKBP1-221ENST00000599833 TMED5Q9Y3A6 229 aa18.1■□□□□ 0.49
SHKBP1-221ENST00000599833 EML6Q6ZMW3 1958 aa18.1■□□□□ 0.49
SHKBP1-221ENST00000599833 COL12A1Q99715 3063 aa18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 KLF11O14901 512 aa18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 SLC28A2O43868 658 aa18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 TBX19O60806 448 aa18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 ERAL1O75616 437 aaKnown RBP18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 NADKO95544 446 aaPredicted RBP18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 BCKDHAP12694 445 aa18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 COX7A2P14406 83 aa18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 RPL14P50914 215 aaKnown RBP18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 ARG2P78540 354 aa18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 TLE1Q04724 770 aa18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 C2orf80Q0P641 193 aa18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 MAP4K2Q12851 820 aa18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 PDE7AQ13946 482 aa18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 TLR1Q15399 786 aa18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 ZNF385BQ569K4 471 aa18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 ZNF628Q5EBL2 1059 aa18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 RPUSD3Q6P087 351 aaKnown RBP18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 FAM111BQ6SJ93 734 aa18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 LYPD8Q6UX82 237 aa18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 PRICKLE2Q7Z3G6 844 aa18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 MIB2Q96AX9 1013 aa18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 ZNF764Q96H86 408 aaPredicted RBP18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 ILKAPQ9H0C8 392 aaPredicted RBP18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 SLC35C2Q9NQQ7 365 aa18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 ANKRD10Q9NXR5 420 aa18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 NKIRAS1Q9NYS0 192 aa18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 HEMK1Q9Y5R4 338 aaPredicted RBP18.09■□□□□ 0.49
SHKBP1-221ENST00000599833 DYTNA2CJ06 578 aa18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 MYO1GB0I1T2 1018 aa18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 HMGB1P1B2RPK0 211 aaPredicted RBP18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 CDK2AP1O14519 115 aa18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 OR10H2O60403 315 aa18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 PEX11AO75192 247 aa18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 ITGA10O75578 1167 aa18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 CBX7O95931 251 aa18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 CSNK2A2P19784 350 aaPredicted RBP18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 ZNF267Q14586 743 aaPredicted RBP18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 EBPQ15125 230 aaKnown RBP18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 PDCD2Q16342 344 aaPredicted RBP18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 GALNTL6Q49A17 601 aa18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 FHL5Q5TD97 284 aa18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 MAVSQ7Z434 540 aa18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 ZNF605Q86T29 641 aa18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 TICAM1Q8IUC6 712 aa18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 GALNT12Q8IXK2 581 aa18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 NUBPLQ8TB37 319 aa18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 EXOSC8Q96B26 276 aaKnown RBP18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 SCMH1Q96GD3 660 aa18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 PPP3R2Q96LZ3 170 aa18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 RASL10BQ96S79 203 aa18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 HES7Q9BYE0 225 aa18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 THAP1Q9NVV9 213 aa18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 BAIAP2L1Q9UHR4 511 aa18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 DTX4Q9Y2E6 619 aa18.08■□□□□ 0.48
SHKBP1-221ENST00000599833 ZNF195O14628 629 aa18.07■□□□□ 0.48
SHKBP1-221ENST00000599833 OR2J2O76002 312 aa18.07■□□□□ 0.48
SHKBP1-221ENST00000599833 INPP5JQ15735 1006 aaPredicted RBP18.07■□□□□ 0.48
SHKBP1-221ENST00000599833 SPINK14Q6IE38 97 aa18.07■□□□□ 0.48
SHKBP1-221ENST00000599833 CCDC116Q8IYX3 515 aa18.07■□□□□ 0.48
SHKBP1-221ENST00000599833 LRRC25Q8N386 305 aaPredicted RBP18.07■□□□□ 0.48
SHKBP1-221ENST00000599833 ADCY4Q8NFM4 1077 aa18.07■□□□□ 0.48
SHKBP1-221ENST00000599833 ZNF675Q8TD23 568 aa18.07■□□□□ 0.48
SHKBP1-221ENST00000599833 NUDT8Q8WV74 236 aa18.07■□□□□ 0.48
SHKBP1-221ENST00000599833 ZNF75CPQ92670 426 aaPredicted RBP18.07■□□□□ 0.48
SHKBP1-221ENST00000599833 ADIPOR1Q96A54 375 aa18.07■□□□□ 0.48
SHKBP1-221ENST00000599833 SNRNP40Q96DI7 357 aaKnown RBP18.07■□□□□ 0.48
SHKBP1-221ENST00000599833 ART5Q96L15 291 aa18.07■□□□□ 0.48
SHKBP1-221ENST00000599833 TSSK3Q96PN8 268 aa18.07■□□□□ 0.48
SHKBP1-221ENST00000599833 TAAR6Q96RI8 345 aa18.07■□□□□ 0.48
SHKBP1-221ENST00000599833 CNPPD1Q9BV87 410 aa18.07■□□□□ 0.48
SHKBP1-221ENST00000599833 TRIM4Q9C037 500 aa18.07■□□□□ 0.48
SHKBP1-221ENST00000599833 WWTR1Q9GZV5 400 aa18.07■□□□□ 0.48
SHKBP1-221ENST00000599833 MANSC1Q9H8J5 431 aa18.07■□□□□ 0.48
SHKBP1-221ENST00000599833 ASIC5Q9NY37 505 aa18.07■□□□□ 0.48
SHKBP1-221ENST00000599833 PSME2Q9UL46 239 aa18.07■□□□□ 0.48
SHKBP1-221ENST00000599833 PCDHGB6Q9Y5F9 930 aa18.07■□□□□ 0.48
SHKBP1-221ENST00000599833 TRAV17A0A0B4J275 112 aa18.06■□□□□ 0.48
SHKBP1-221ENST00000599833 PYCARD-AS1I3L0S3 204 aa18.06■□□□□ 0.48
SHKBP1-221ENST00000599833 WWP2O00308 870 aa18.06■□□□□ 0.48
SHKBP1-221ENST00000599833 PRAMEF2O60811 474 aa18.06■□□□□ 0.48
SHKBP1-221ENST00000599833 PCSK2P16519 638 aa18.06■□□□□ 0.48
SHKBP1-221ENST00000599833 NT5EP21589 574 aa18.06■□□□□ 0.48
SHKBP1-221ENST00000599833 FRKP42685 505 aaPredicted RBP18.06■□□□□ 0.48
SHKBP1-221ENST00000599833 HLCSP50747 726 aa18.06■□□□□ 0.48
SHKBP1-221ENST00000599833 MRPS35P82673 323 aaKnown RBP18.06■□□□□ 0.48
SHKBP1-221ENST00000599833 FOXK1P85037 733 aa18.06■□□□□ 0.48
SHKBP1-221ENST00000599833 OR1C1Q15619 314 aa18.06■□□□□ 0.48
SHKBP1-221ENST00000599833 TRMT12Q53H54 448 aaKnown RBP18.06■□□□□ 0.48
SHKBP1-221ENST00000599833 ANKRD26P1Q6NSI1 321 aa18.06■□□□□ 0.48
SHKBP1-221ENST00000599833 LARP4Q71RC2 724 aaKnown RBP eCLIP18.06■□□□□ 0.48
SHKBP1-221ENST00000599833 CLHC1Q8NHS4 586 aa18.06■□□□□ 0.48
SHKBP1-221ENST00000599833 C1orf50Q9BV19 199 aa18.06■□□□□ 0.48
SHKBP1-221ENST00000599833 OR10A5Q9H207 317 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms