RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 TBC1D10AQ9BXI6 508 aa4.4□□□□□ -1.71
SMAD4-216ENST00000593223 GPR61Q9BZJ8 451 aa4.4□□□□□ -1.71
SMAD4-216ENST00000593223 MED4Q9NPJ6 270 aa4.4□□□□□ -1.71
SMAD4-216ENST00000593223 TBC1D13Q9NVG8 400 aa4.4□□□□□ -1.71
SMAD4-216ENST00000593223 DNAJC11Q9NVH1 559 aa4.4□□□□□ -1.71
SMAD4-216ENST00000593223 HAO2Q9NYQ3 351 aa4.4□□□□□ -1.71
SMAD4-216ENST00000593223 B3GAT1Q9P2W7 334 aa4.4□□□□□ -1.71
SMAD4-216ENST00000593223 SLC24A2Q9UI40 661 aa4.4□□□□□ -1.71
SMAD4-216ENST00000593223 ZDHHC2Q9UIJ5 367 aa4.4□□□□□ -1.71
SMAD4-216ENST00000593223 EXOC6BQ9Y2D4 811 aa4.4□□□□□ -1.71
SMAD4-216ENST00000593223 RIPK3Q9Y572 518 aa4.4□□□□□ -1.71
SMAD4-216ENST00000593223 NME7Q9Y5B8 376 aa4.4□□□□□ -1.71
SMAD4-216ENST00000593223 ANKRD26Q9UPS8 1709 aa4.4□□□□□ -1.71
SMAD4-216ENST00000593223 ZFHX2Q9C0A1 2572 aaPredicted RBP4.4□□□□□ -1.71
SMAD4-216ENST00000593223 RGPD2P0DJD1 1756 aa4.4□□□□□ -1.71
SMAD4-216ENST00000593223 FLNBO75369 2602 aaKnown RBP4.4□□□□□ -1.71
SMAD4-216ENST00000593223 DCHS1Q96JQ0 3298 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 GPR179Q6PRD1 2367 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 COL2A1P02458 1487 aaPredicted RBP4.39□□□□□ -1.71
SMAD4-216ENST00000593223 COL5A3P25940 1745 aaPredicted RBP4.39□□□□□ -1.71
SMAD4-216ENST00000593223 A0A075B6Q4 140 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 A0A0U1RQS6 177 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 CFAP73A6NFT4 308 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 SLC15A5A6NIM6 579 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 ZNF716A6NP11 495 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 ZNF197O14709 1029 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 MED7O43513 233 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 NIPSNAP2O75323 286 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 SCGB2A1O75556 95 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 TRMUO75648 421 aaKnown RBP4.39□□□□□ -1.71
SMAD4-216ENST00000593223 CLPTM1O96005 669 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 AGTP01019 485 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 APOHP02749 345 aaPredicted RBP4.39□□□□□ -1.71
SMAD4-216ENST00000593223 HMBSP08397 361 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 ZNF735P0CB33 412 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 ZNF24P17028 368 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 ADRA2CP18825 462 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 ITIH1P19827 911 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 CYP2A7P20853 494 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 STARP49675 285 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 PLTPP55058 493 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 RPS8P62241 208 aaKnown RBP4.39□□□□□ -1.71
SMAD4-216ENST00000593223 CDR2Q01850 454 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 TNFRSF17Q02223 184 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 SP3Q02447 781 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 PDZK1IP1Q13113 114 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 PPIGQ13427 754 aaKnown RBP eCLIP4.39□□□□□ -1.718e-6■■■■□ 22.7
SMAD4-216ENST00000593223 KARSQ15046 597 aaKnown RBP4.39□□□□□ -1.71
SMAD4-216ENST00000593223 UGP2Q16851 508 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 FFAR4Q5NUL3 377 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 ELFN2Q5R3F8 820 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 CAMKMTQ7Z624 323 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 ZNF595Q8IYB9 648 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 ZNF843Q8N446 348 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 KBTBD8Q8NFY9 601 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 OR52E1Q8NGJ3 308 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 AKR7LQ8NHP1 331 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 GRHL3Q8TE85 626 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 DNASE1L2Q92874 299 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 FBXO32Q969P5 355 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 EFHD2Q96C19 240 aaPredicted RBP4.39□□□□□ -1.71
SMAD4-216ENST00000593223 PGM2Q96G03 612 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 ZBED3Q96IU2 234 aaPredicted RBP4.39□□□□□ -1.71
SMAD4-216ENST00000593223 SECISBP2Q96T21 854 aaKnown RBP4.39□□□□□ -1.71
SMAD4-216ENST00000593223 LITAFQ99732 161 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 EDEM2Q9BV94 578 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 PINK1Q9BXM7 581 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 RAB17Q9H0T7 212 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 ARRDC1-AS1Q9H2J1 176 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 LZTFL1Q9NQ48 299 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 FARSBQ9NSD9 589 aaKnown RBP4.39□□□□□ -1.71
SMAD4-216ENST00000593223 FAM212BQ9NTI7 297 aaPredicted RBP4.39□□□□□ -1.71
SMAD4-216ENST00000593223 FAM120CQ9NX05 1096 aaKnown RBP4.39□□□□□ -1.71
SMAD4-216ENST00000593223 FLRT3Q9NZU0 649 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 CD300AQ9UGN4 299 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 NARFQ9UHQ1 456 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 ANGPTL2Q9UKU9 493 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 MRPS2Q9Y399 296 aaKnown RBP4.39□□□□□ -1.71
SMAD4-216ENST00000593223 LTN1O94822 1766 aa4.39□□□□□ -1.71
SMAD4-216ENST00000593223 ALPK3Q96L96 1907 aa4.38□□□□□ -1.71
SMAD4-216ENST00000593223 TRAV6A0A075B6T7 132 aa4.38□□□□□ -1.71
SMAD4-216ENST00000593223 LOC101059948A0A1B0GTJ6 334 aa4.38□□□□□ -1.71
SMAD4-216ENST00000593223 EDDM13A0A1B0GTR0 161 aa4.38□□□□□ -1.71
SMAD4-216ENST00000593223 A0A1W2PN81 502 aa4.38□□□□□ -1.71
SMAD4-216ENST00000593223 GOLGA8OA6NCC3 632 aa4.38□□□□□ -1.71
SMAD4-216ENST00000593223 OR6C65A6NJZ3 312 aa4.38□□□□□ -1.71
SMAD4-216ENST00000593223 GOLGA8NF8WBI6 632 aa4.38□□□□□ -1.71
SMAD4-216ENST00000593223 H0YHG0 523 aa4.38□□□□□ -1.71
SMAD4-216ENST00000593223 ATP6V0E1O15342 81 aa4.38□□□□□ -1.71
SMAD4-216ENST00000593223 OR10H2O60403 315 aa4.38□□□□□ -1.71
SMAD4-216ENST00000593223 RNASEH1O60930 286 aaKnown RBP4.38□□□□□ -1.71
SMAD4-216ENST00000593223 SURF6O75683 361 aaKnown RBP4.38□□□□□ -1.71
SMAD4-216ENST00000593223 CRTAPO75718 401 aaPredicted RBP4.38□□□□□ -1.71
SMAD4-216ENST00000593223 SLCO2B1O94956 709 aa4.38□□□□□ -1.71
SMAD4-216ENST00000593223 MFN2O95140 757 aa4.38□□□□□ -1.71
SMAD4-216ENST00000593223 GAS8-AS1O95177 125 aa4.38□□□□□ -1.71
SMAD4-216ENST00000593223 EML2O95834 649 aa4.38□□□□□ -1.71
SMAD4-216ENST00000593223 OPN1LWP04000 364 aa4.38□□□□□ -1.71
SMAD4-216ENST00000593223 SERPING1P05155 500 aa4.38□□□□□ -1.71
SMAD4-216ENST00000593223 FAM58BPP0C7Q3 252 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms