RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 GAL3ST4Q96RP7 486 aa12.83□□□□□ -0.36
VMP1-209ENST00000588915 ATOH8Q96SQ7 321 aa12.83□□□□□ -0.36
VMP1-209ENST00000588915 ANGPTL4Q9BY76 406 aa12.83□□□□□ -0.36
VMP1-209ENST00000588915 TRIM31Q9BZY9 425 aa12.83□□□□□ -0.36
VMP1-209ENST00000588915 UBQLN3Q9H347 655 aa12.83□□□□□ -0.36
VMP1-209ENST00000588915 ALG9Q9H6U8 611 aa12.83□□□□□ -0.36
VMP1-209ENST00000588915 DDX31Q9H8H2 851 aaKnown RBP12.83□□□□□ -0.36
VMP1-209ENST00000588915 WDR41Q9HAD4 459 aa12.83□□□□□ -0.36
VMP1-209ENST00000588915 DMRT3Q9NQL9 472 aa12.83□□□□□ -0.36
VMP1-209ENST00000588915 RNF14Q9UBS8 474 aa12.83□□□□□ -0.36
VMP1-209ENST00000588915 FETUBQ9UGM5 382 aa12.83□□□□□ -0.36
VMP1-209ENST00000588915 CBLCQ9ULV8 474 aa12.83□□□□□ -0.36
VMP1-209ENST00000588915 PLEKHA6Q9Y2H5 1048 aa12.83□□□□□ -0.36
VMP1-209ENST00000588915 RPH3AQ9Y2J0 694 aaPredicted RBP12.83□□□□□ -0.36
VMP1-209ENST00000588915 C15orf38-AP3S2A0A0A6YYH1 394 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 TCRBV9S1A1TA0A576 114 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 TUBAL3A6NHL2 446 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 CXorf49A8MYA2 514 aaPredicted RBP12.82□□□□□ -0.36
VMP1-209ENST00000588915 H0YIV9 168 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 PLPP1O14494 284 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 UGDHO60701 494 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 SH3BGRLO75368 114 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 PIAS1O75925 651 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 RAF1P04049 648 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 CRABP2P29373 138 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 OPRM1P35372 400 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 TRPC1P48995 793 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 CDK9P50750 372 aaKnown RBP12.82□□□□□ -0.36
VMP1-209ENST00000588915 HNRNPH2P55795 449 aaKnown RBP12.82□□□□□ -0.36
VMP1-209ENST00000588915 SNTB1Q13884 538 aaKnown RBP12.82□□□□□ -0.36
VMP1-209ENST00000588915 C18orf63Q68DL7 685 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 PAMR1Q6UXH9 720 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 C3orf62Q6ZUJ4 267 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 TBC1D1Q86TI0 1168 aaPredicted RBP12.82□□□□□ -0.36
VMP1-209ENST00000588915 C17orf47Q8NEP4 570 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 RHEBL1Q8TAI7 183 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 SPPL2AQ8TCT8 520 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 REPS1Q96D71 796 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 JSRP1Q96MG2 331 aaPredicted RBP12.82□□□□□ -0.36
VMP1-209ENST00000588915 SORBS1Q9BX66 1292 aaKnown RBP12.82□□□□□ -0.36
VMP1-209ENST00000588915 CALHM2Q9HA72 323 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 SNX24Q9Y343 169 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 ASB4Q9Y574 426 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 NPFFR2Q9Y5X5 522 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 SAR1BQ9Y6B6 198 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 MPDZO75970 2070 aa12.82□□□□□ -0.36
VMP1-209ENST00000588915 MBD3L4A6NDZ8 208 aaPredicted RBP12.81□□□□□ -0.36
VMP1-209ENST00000588915 MBD3L3A6NE82 208 aaPredicted RBP12.81□□□□□ -0.36
VMP1-209ENST00000588915 MBD3L5A6NJ08 208 aaPredicted RBP12.81□□□□□ -0.36
VMP1-209ENST00000588915 SYCE1LA8MT33 242 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 SUPT3HB4E1H0 165 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 SUPT3HO75486 399 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 TRAPPC6AO75865 159 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 LTA4HP09960 611 aaKnown RBP12.81□□□□□ -0.36
VMP1-209ENST00000588915 FAM58BPP0C7Q3 252 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 NAGAP17050 411 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 TACR1P25103 407 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 CTSSP25774 331 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 BSGP35613 385 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 PAFAH1B1P43034 410 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 ZNF136P52737 540 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 NRG3P56975 720 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 RPS13P62277 151 aaKnown RBP12.81□□□□□ -0.36
VMP1-209ENST00000588915 FUT7Q11130 342 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 HLA-DQA1Q5Y7H0 255 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 METTL2BQ6P1Q9 378 aaKnown RBP12.81□□□□□ -0.36
VMP1-209ENST00000588915 TMEM81Q6P7N7 255 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 CYP20A1Q6UW02 462 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 CAPN12Q6ZSI9 719 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 RAPH1Q70E73 1250 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 BIVMQ86UB2 503 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 MBD3L2Q8NHZ7 208 aaPredicted RBP12.81□□□□□ -0.36
VMP1-209ENST00000588915 EXT2Q93063 718 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 NTNG2Q96CW9 530 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 TMEM41AQ96HV5 264 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 MTERF1Q99551 399 aaKnown RBP12.81□□□□□ -0.36
VMP1-209ENST00000588915 ZNF717Q9BY31 904 aaPredicted RBP12.81□□□□□ -0.36
VMP1-209ENST00000588915 CXorf21Q9HAI6 301 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 JKAMPQ9P055 326 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 WHRNQ9P202 907 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 C15orf41Q9Y2V0 281 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 ANGPTL3Q9Y5C1 460 aa12.81□□□□□ -0.36
VMP1-209ENST00000588915 FREM3P0C091 2139 aa12.8□□□□□ -0.36
VMP1-209ENST00000588915 NCKAP5O14513 1909 aa12.8□□□□□ -0.36
VMP1-209ENST00000588915 A0A0A6YYD5 115 aa12.8□□□□□ -0.36
VMP1-209ENST00000588915 A0A1W2PR48 441 aa12.8□□□□□ -0.36
VMP1-209ENST00000588915 FOXE1O00358 373 aaPredicted RBP12.8□□□□□ -0.36
VMP1-209ENST00000588915 ACSL3O95573 720 aa12.8□□□□□ -0.36
VMP1-209ENST00000588915 ACTL6AO96019 429 aa12.8□□□□□ -0.36
VMP1-209ENST00000588915 CLPSP04118 112 aa12.8□□□□□ -0.36
VMP1-209ENST00000588915 NR2F6P10588 404 aa12.8□□□□□ -0.36
VMP1-209ENST00000588915 MTHFD2P13995 350 aa12.8□□□□□ -0.36
VMP1-209ENST00000588915 CASP3P42574 277 aa12.8□□□□□ -0.36
VMP1-209ENST00000588915 MASP1P48740 699 aa12.8□□□□□ -0.36
VMP1-209ENST00000588915 CALCOCO2Q13137 446 aa12.8□□□□□ -0.36
VMP1-209ENST00000588915 DDX39BQ13838 428 aaKnown RBP12.8□□□□□ -0.36
VMP1-209ENST00000588915 DEFB113Q30KQ7 82 aa12.8□□□□□ -0.36
VMP1-209ENST00000588915 FNDC7Q5VTL7 733 aa12.8□□□□□ -0.36
VMP1-209ENST00000588915 NUDT13Q86X67 352 aa12.8□□□□□ -0.36
VMP1-209ENST00000588915 TEX9Q8N6V9 391 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms