RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 PRKAG1P54619 331 aa23.51■■□□□ 1.35
SHMT1-207ENST00000580002 RHAGQ02094 409 aa23.51■■□□□ 1.35
SHMT1-207ENST00000580002 ANGPTL8Q6UXH0 198 aa23.51■■□□□ 1.35
SHMT1-207ENST00000580002 SZRD1Q7Z422 152 aa23.51■■□□□ 1.35
SHMT1-207ENST00000580002 RNF130Q86XS8 419 aa23.51■■□□□ 1.35
SHMT1-207ENST00000580002 ADAMTS18Q8TE60 1221 aa23.51■■□□□ 1.35
SHMT1-207ENST00000580002 OTUB1Q96FW1 271 aaPredicted RBP23.51■■□□□ 1.35
SHMT1-207ENST00000580002 RAB3IPQ96QF0 476 aaPredicted RBP23.51■■□□□ 1.35
SHMT1-207ENST00000580002 OR1F2PQ96R84 312 aa23.51■■□□□ 1.35
SHMT1-207ENST00000580002 TAAR9Q96RI9 348 aa23.51■■□□□ 1.35
SHMT1-207ENST00000580002 ECSITQ9BQ95 431 aa23.51■■□□□ 1.35
SHMT1-207ENST00000580002 VN1R1Q9GZP7 353 aa23.51■■□□□ 1.35
SHMT1-207ENST00000580002 CHST8Q9H2A9 424 aa23.51■■□□□ 1.35
SHMT1-207ENST00000580002 EGFL7Q9UHF1 273 aa23.51■■□□□ 1.35
SHMT1-207ENST00000580002 MKL2Q9ULH7 1088 aa23.51■■□□□ 1.35
SHMT1-207ENST00000580002 SLC30A4O14863 429 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 HBQ1P09105 142 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 ME2P23368 584 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 CHI3L1P36222 383 aaPredicted RBP23.5■■□□□ 1.35
SHMT1-207ENST00000580002 HSD17B7P56937 341 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 IGLV3-21P80748 117 aaPredicted RBP23.5■■□□□ 1.35
SHMT1-207ENST00000580002 SPDYE7PQ495Y7 208 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 SAMD4BQ5PRF9 694 aaKnown RBP23.5■■□□□ 1.35
SHMT1-207ENST00000580002 FAAH2Q6GMR7 532 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 OVCH1Q7RTY7 1134 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 TIPARPQ7Z3E1 657 aaKnown RBP23.5■■□□□ 1.35
SHMT1-207ENST00000580002 C6orf120Q7Z4R8 191 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 ZFP28Q8NHY6 868 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 MMADHCQ9H3L0 296 aaPredicted RBP23.5■■□□□ 1.35
SHMT1-207ENST00000580002 SERHL2Q9H4I8 314 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 ALG2Q9H553 416 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 DENND2DQ9H6A0 471 aaPredicted RBP23.5■■□□□ 1.35
SHMT1-207ENST00000580002 MKKSQ9NPJ1 570 aaPredicted RBP23.5■■□□□ 1.35
SHMT1-207ENST00000580002 DLL3Q9NYJ7 618 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 IFT80Q9P2H3 777 aaPredicted RBP23.5■■□□□ 1.35
SHMT1-207ENST00000580002 POMPQ9Y244 141 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 A8MUA0 341 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 STK17BO94768 372 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 ZGLP1P0C6A0 271 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 SLC35E2P0CK97 266 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 ETFAP13804 333 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 RGNQ15493 299 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 PRICKLE4Q2TBC4 344 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 ZNF628Q5EBL2 1059 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 SAXO2Q658L1 398 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 WDR53Q7Z5U6 358 aaPredicted RBP23.5■■□□□ 1.35
SHMT1-207ENST00000580002 YIPF4Q9BSR8 244 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 NEUROD4Q9HD90 331 aa23.5■■□□□ 1.35
SHMT1-207ENST00000580002 IGLV3-12A0A075B6K2 115 aa23.49■■□□□ 1.35
SHMT1-207ENST00000580002 UPK1AO00322 258 aa23.49■■□□□ 1.35
SHMT1-207ENST00000580002 KCNK5O95279 499 aa23.49■■□□□ 1.35
SHMT1-207ENST00000580002 ONECUT2O95948 504 aa23.49■■□□□ 1.35
SHMT1-207ENST00000580002 ATP1B1P05026 303 aa23.49■■□□□ 1.35
SHMT1-207ENST00000580002 NCK1P16333 377 aa23.49■■□□□ 1.35
SHMT1-207ENST00000580002 GPX2P18283 190 aa23.49■■□□□ 1.35
SHMT1-207ENST00000580002 EEFSECP57772 596 aaKnown RBP23.49■■□□□ 1.35
SHMT1-207ENST00000580002 TP53BP2Q13625 1128 aa23.49■■□□□ 1.35
SHMT1-207ENST00000580002 NKG7Q16617 165 aa23.49■■□□□ 1.35
SHMT1-207ENST00000580002 CPZQ66K79 652 aa23.49■■□□□ 1.35
SHMT1-207ENST00000580002 CALHM3Q86XJ0 350 aa23.49■■□□□ 1.35
SHMT1-207ENST00000580002 MR1Q95460 341 aa23.49■■□□□ 1.35
SHMT1-207ENST00000580002 C16orf58Q96GQ5 468 aa23.49■■□□□ 1.35
SHMT1-207ENST00000580002 ZCCHC3Q9NUD5 404 aaKnown RBP23.49■■□□□ 1.35
SHMT1-207ENST00000580002 MAT2BQ9NZL9 334 aa23.49■■□□□ 1.35
SHMT1-207ENST00000580002 IGKV3D-11A0A0A0MRZ8 115 aa23.48■■□□□ 1.35
SHMT1-207ENST00000580002 C15orf38-AP3S2A0A0A6YYH1 394 aa23.48■■□□□ 1.35
SHMT1-207ENST00000580002 CDK4P11802 303 aa23.48■■□□□ 1.35
SHMT1-207ENST00000580002 KPNB1Q14974 876 aaKnown RBP23.48■■□□□ 1.35
SHMT1-207ENST00000580002 EXOSC7Q15024 291 aaKnown RBP23.48■■□□□ 1.35
SHMT1-207ENST00000580002 CYB5D1Q6P9G0 228 aa23.48■■□□□ 1.35
SHMT1-207ENST00000580002 LANCL3Q6ZV70 420 aa23.48■■□□□ 1.35
SHMT1-207ENST00000580002 MED25Q71SY5 747 aa23.48■■□□□ 1.35
SHMT1-207ENST00000580002 ARPINQ7Z6K5 226 aa23.48■■□□□ 1.35
SHMT1-207ENST00000580002 TRIML2Q8N7C3 387 aa23.48■■□□□ 1.35
SHMT1-207ENST00000580002 WDR36Q8NI36 951 aaKnown RBP23.48■■□□□ 1.35
SHMT1-207ENST00000580002 SPRY4Q9C004 299 aa23.48■■□□□ 1.35
SHMT1-207ENST00000580002 ACOT8O14734 319 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 OR10H2O60403 315 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 CRATP43155 626 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 RAB15P59190 212 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 ELF3P78545 371 aaPredicted RBP23.47■■□□□ 1.35
SHMT1-207ENST00000580002 ADRM1Q16186 407 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 FHL5Q5TD97 284 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 ARHGAP24Q8N264 748 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 HIPK4Q8NE63 616 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 FBXO30Q8TB52 745 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 MAL2Q969L2 176 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 NEURL3Q96EH8 262 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 KCTD14Q9BQ13 255 aaPredicted RBP23.47■■□□□ 1.35
SHMT1-207ENST00000580002 TGIF2Q9GZN2 237 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 EQTNQ9NQ60 294 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 PNO1Q9NRX1 252 aaKnown RBP23.47■■□□□ 1.35
SHMT1-207ENST00000580002 DCDC2BA2VCK2 349 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 EVPLLA8MZ36 301 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 TNFSF15O95150 251 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 IFNA16P05015 189 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 HSD17B1P14061 328 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 OCA2Q04671 838 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 DUSP8Q13202 625 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 RSPO4Q2I0M5 234 aaPredicted RBP23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms