RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 WWTR1Q9GZV5 400 aa22.1■■□□□ 1.13
SHMT1-206ENST00000579558 DEPPQ9NTK1 212 aa22.1■■□□□ 1.13
SHMT1-206ENST00000579558 PSME2Q9UL46 239 aa22.1■■□□□ 1.13
SHMT1-206ENST00000579558 PLLPQ9Y342 182 aa22.1■■□□□ 1.13
SHMT1-206ENST00000579558 GNG14A0A1W2PPG7 69 aa22.09■■□□□ 1.13
SHMT1-206ENST00000579558 SERTM1A2A2V5 107 aa22.09■■□□□ 1.13
SHMT1-206ENST00000579558 SLC19A2O60779 497 aa22.09■■□□□ 1.13
SHMT1-206ENST00000579558 NADKO95544 446 aaPredicted RBP22.09■■□□□ 1.13
SHMT1-206ENST00000579558 CLPSP04118 112 aa22.09■■□□□ 1.13
SHMT1-206ENST00000579558 RAE1P78406 368 aaKnown RBP22.09■■□□□ 1.13
SHMT1-206ENST00000579558 PCLAFQ15004 111 aa22.09■■□□□ 1.13
SHMT1-206ENST00000579558 EBPQ15125 230 aaKnown RBP22.09■■□□□ 1.13
SHMT1-206ENST00000579558 IMPG1Q17R60 797 aa22.09■■□□□ 1.13
SHMT1-206ENST00000579558 GHDCQ8N2G8 530 aa22.09■■□□□ 1.13
SHMT1-206ENST00000579558 SLC15A4Q8N697 577 aa22.09■■□□□ 1.13
SHMT1-206ENST00000579558 BANPQ8N9N5 519 aa22.09■■□□□ 1.13
SHMT1-206ENST00000579558 ZFP62Q8NB50 900 aaPredicted RBP22.09■■□□□ 1.13
SHMT1-206ENST00000579558 GOLM1Q8NBJ4 401 aa22.09■■□□□ 1.13
SHMT1-206ENST00000579558 PARD6BQ9BYG5 372 aa22.09■■□□□ 1.13
SHMT1-206ENST00000579558 SHCBP1LQ9BZQ2 653 aa22.09■■□□□ 1.13
SHMT1-206ENST00000579558 SH3BGRL2Q9UJC5 107 aa22.09■■□□□ 1.13
SHMT1-206ENST00000579558 DLGAP4Q9Y2H0 992 aa22.09■■□□□ 1.13
SHMT1-206ENST00000579558 IL3P08700 152 aa22.08■■□□□ 1.13
SHMT1-206ENST00000579558 CSNK2A2P19784 350 aaPredicted RBP22.08■■□□□ 1.13
SHMT1-206ENST00000579558 SERPINB3P29508 390 aa22.08■■□□□ 1.13
SHMT1-206ENST00000579558 TIA1P31483 386 aaKnown RBP eCLIP22.08■■□□□ 1.13
SHMT1-206ENST00000579558 FEN1P39748 380 aaKnown RBP22.08■■□□□ 1.13
SHMT1-206ENST00000579558 CA7P43166 264 aa22.08■■□□□ 1.13
SHMT1-206ENST00000579558 CASP6P55212 293 aa22.08■■□□□ 1.13
SHMT1-206ENST00000579558 FUT7Q11130 342 aa22.08■■□□□ 1.13
SHMT1-206ENST00000579558 SPDYAQ5MJ70 313 aa22.08■■□□□ 1.13
SHMT1-206ENST00000579558 OR2M7Q8NG81 312 aa22.08■■□□□ 1.13
SHMT1-206ENST00000579558 C16orf52Q8NHV5 167 aa22.08■■□□□ 1.13
SHMT1-206ENST00000579558 EBPLQ9BY08 206 aa22.08■■□□□ 1.13
SHMT1-206ENST00000579558 TNFRSF12AQ9NP84 129 aa22.08■■□□□ 1.13
SHMT1-206ENST00000579558 HEY2Q9UBP5 337 aa22.08■■□□□ 1.13
SHMT1-206ENST00000579558 ZNF780BQ9Y6R6 833 aa22.08■■□□□ 1.13
SHMT1-206ENST00000579558 DIDO1Q9BTC0 2240 aaKnown RBP22.08■■□□□ 1.13
SHMT1-206ENST00000579558 A0A0G2JMM0 328 aa22.07■■□□□ 1.12
SHMT1-206ENST00000579558 A0A1W2PPB8 328 aa22.07■■□□□ 1.12
SHMT1-206ENST00000579558 A0A1W2PRS3 328 aa22.07■■□□□ 1.12
SHMT1-206ENST00000579558 KIR3DP1A8MWS1 328 aa22.07■■□□□ 1.12
SHMT1-206ENST00000579558 G3V3Y1 287 aa22.07■■□□□ 1.12
SHMT1-206ENST00000579558 HS6ST1O60243 411 aa22.07■■□□□ 1.12
SHMT1-206ENST00000579558 SPAG7O75391 227 aa22.07■■□□□ 1.12
SHMT1-206ENST00000579558 HSF1Q00613 529 aa22.07■■□□□ 1.12
SHMT1-206ENST00000579558 PLGLB1Q02325 96 aa22.07■■□□□ 1.12
SHMT1-206ENST00000579558 ZNF791Q3KP31 576 aaPredicted RBP22.07■■□□□ 1.12
SHMT1-206ENST00000579558 MREGQ8N565 214 aa22.07■■□□□ 1.12
SHMT1-206ENST00000579558 FAM111AQ96PZ2 611 aa22.07■■□□□ 1.12
SHMT1-206ENST00000579558 GATA5Q9BWX5 397 aaPredicted RBP22.07■■□□□ 1.12
SHMT1-206ENST00000579558 BRINP2Q9C0B6 783 aa22.07■■□□□ 1.12
SHMT1-206ENST00000579558 OR10A5Q9H207 317 aa22.07■■□□□ 1.12
SHMT1-206ENST00000579558 SACM1LQ9NTJ5 587 aa22.07■■□□□ 1.12
SHMT1-206ENST00000579558 UTS2RQ9UKP6 389 aa22.07■■□□□ 1.12
SHMT1-206ENST00000579558 DOPEY1Q5JWR5 2465 aa22.07■■□□□ 1.12
SHMT1-206ENST00000579558 C2orf92A0A1B0GVN3 265 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 PINLYPA6NC86 204 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 CCL21O00585 134 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 ZG16O60844 167 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 TRIM13O60858 407 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 P04436 131 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 ATP1B1P05026 303 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 CCL3P10147 92 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 UROSP10746 265 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 DRD2P14416 443 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 CNR1P21554 472 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 PTGER1P34995 402 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 HLA-DQA1Q5Y7H0 255 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 FAM180BQ6P0A1 224 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 GALNT18Q6P9A2 607 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 LYPD8Q6UX82 237 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 BNC2Q6ZN30 1099 aaPredicted RBP22.06■■□□□ 1.12
SHMT1-206ENST00000579558 GK5Q6ZS86 529 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 SPPL2CQ8IUH8 684 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 VWA5B2Q8N398 1253 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 ZNF615Q8N8J6 731 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 OR7G1Q8NGA0 311 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 C16orf78Q8WTQ4 265 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 SPACA9Q96E40 222 aaPredicted RBP22.06■■□□□ 1.12
SHMT1-206ENST00000579558 CNRIP1Q96F85 164 aaPredicted RBP22.06■■□□□ 1.12
SHMT1-206ENST00000579558 SMC6Q96SB8 1091 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 FAM173AQ9BQD7 235 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 PFDN4Q9NQP4 134 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 RYDENQ9NUL5 291 aaKnown RBP22.06■■□□□ 1.12
SHMT1-206ENST00000579558 SLC17A7Q9P2U7 560 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 SUCOQ9UBS9 1254 aaKnown RBP22.06■■□□□ 1.12
SHMT1-206ENST00000579558 ZNF835Q9Y2P0 537 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 UTP20O75691 2785 aaKnown RBP22.06■■□□□ 1.12
SHMT1-206ENST00000579558 CROCCQ5TZA2 2017 aa22.06■■□□□ 1.12
SHMT1-206ENST00000579558 EML6Q6ZMW3 1958 aa22.05■■□□□ 1.12
SHMT1-206ENST00000579558 CLDN1O95832 211 aa22.05■■□□□ 1.12
SHMT1-206ENST00000579558 ANXA4P09525 319 aaPredicted RBP22.05■■□□□ 1.12
SHMT1-206ENST00000579558 ABOP16442 354 aa22.05■■□□□ 1.12
SHMT1-206ENST00000579558 ALDH3A1P30838 453 aa22.05■■□□□ 1.12
SHMT1-206ENST00000579558 NR0B1P51843 470 aaKnown RBP22.05■■□□□ 1.12
SHMT1-206ENST00000579558 DUSP2Q05923 314 aa22.05■■□□□ 1.12
SHMT1-206ENST00000579558 HEPACAMQ14CZ8 416 aa22.05■■□□□ 1.12
SHMT1-206ENST00000579558 C3AR1Q16581 482 aa22.05■■□□□ 1.12
SHMT1-206ENST00000579558 PRICKLE4Q2TBC4 344 aa22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms