RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 POU1F1P28069 291 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 GDI1P31150 447 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 NCBP2P52298 156 aaKnown RBP eCLIP9.53□□□□□ -0.88
VPS53-220ENST00000576149 OLR1P78380 273 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 ABATP80404 500 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 NUMA1Q14980 2115 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 UAP1L1Q3KQV9 507 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 LEXMQ3ZCV2 418 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 MRM1Q6IN84 353 aaKnown RBP9.53□□□□□ -0.88
VPS53-220ENST00000576149 TMEM64Q6YI46 380 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 DEF8Q6ZN54 512 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 TBC1D19Q8N5T2 526 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 VANGL1Q8TAA9 524 aaPredicted RBP9.53□□□□□ -0.88
VPS53-220ENST00000576149 C9orf43Q8TAL5 461 aaPredicted RBP9.53□□□□□ -0.88
VPS53-220ENST00000576149 XAGE5Q8WWM1 108 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 DACH2Q96NX9 599 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 FUZQ9BT04 418 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 MROQ9BYG7 248 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 SLC17A9Q9BYT1 436 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 PRDM7Q9NQW5 492 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 SEMA3GQ9NS98 782 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 ZCCHC3Q9NUD5 404 aaKnown RBP9.53□□□□□ -0.88
VPS53-220ENST00000576149 DNAAF2Q9NVR5 837 aaKnown RBP9.53□□□□□ -0.88
VPS53-220ENST00000576149 FBXL12Q9NXK8 326 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 NDOR1Q9UHB4 597 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 GPSM3Q9Y4H4 160 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 ASB4Q9Y574 426 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 C5orf42Q9H799 3197 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 GLOD5A6NK44 160 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 PDZK1P1A8MUH7 402 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 KPNA4O00629 521 aaPredicted RBP9.52□□□□□ -0.89
VPS53-220ENST00000576149 HAT1O14929 419 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 ERI3O43414 337 aaKnown RBP9.52□□□□□ -0.89
VPS53-220ENST00000576149 PLRG1O43660 514 aaKnown RBP9.52□□□□□ -0.89
VPS53-220ENST00000576149 OR10H3O60404 316 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 CNOT3O75175 753 aaKnown RBP9.52□□□□□ -0.89
VPS53-220ENST00000576149 BPNT1O95861 308 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 STATHP02808 62 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 RPLP0P05388 317 aaKnown RBP9.52□□□□□ -0.89
VPS53-220ENST00000576149 NR2F1P10589 423 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 HOXB3P14651 431 aaPredicted RBP9.52□□□□□ -0.89
VPS53-220ENST00000576149 HIST1H1TP22492 207 aaPredicted RBP9.52□□□□□ -0.89
VPS53-220ENST00000576149 ATP5A1P25705 553 aaKnown RBP9.52□□□□□ -0.89
VPS53-220ENST00000576149 NTSP30990 170 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 GRK5P34947 590 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 TIE1P35590 1138 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 IGFALSP35858 605 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 AHRP35869 848 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 KIR2DL1P43626 348 aaPredicted RBP9.52□□□□□ -0.89
VPS53-220ENST00000576149 SLC15A1P46059 708 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 RGS6P49758 472 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 DGKEP52429 567 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 ARFIP1P53367 373 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 LIMK1P53667 647 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 SMIM11AP58511 58 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 SLAMF1Q13291 335 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 OXA1LQ15070 435 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 ITPRIPL2Q3MIP1 535 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 ARMCX4Q5H9R4 360 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 FAAH2Q6GMR7 532 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 NIPAL1Q6NVV3 410 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 ABHD17CQ6PCB6 329 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 USP43Q70EL4 1123 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 ZNF367Q7RTV3 350 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 SZRD1Q7Z422 152 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 COMTD1Q86VU5 262 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 ACOT4Q8N9L9 421 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 OR2L3Q8NG85 312 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 OR14C36Q8NHC7 312 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 MCFD2Q8NI22 146 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 SLC7A13Q8TCU3 470 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 FAM131CQ96AQ9 280 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 BBS4Q96RK4 519 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 MACROD1Q9BQ69 325 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 SARGQ9BW04 601 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 MKRN2Q9H000 416 aaKnown RBP9.52□□□□□ -0.89
VPS53-220ENST00000576149 DSN1Q9H410 356 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 IGFLR1Q9H665 355 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 BCL2L10Q9HD36 194 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 PRDM8Q9NQV8 689 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 LMCD1Q9NZU5 365 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 ZMAT5Q9UDW3 170 aaKnown RBP9.52□□□□□ -0.89
VPS53-220ENST00000576149 MOSPD1Q9UJG1 213 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 A4GNTQ9UNA3 340 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 YBX2Q9Y2T7 364 aaKnown RBP9.52□□□□□ -0.89
VPS53-220ENST00000576149 ATG4BQ9Y4P1 393 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 ATG2AQ2TAZ0 1938 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 CKAP5Q14008 2032 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 A0A1W2PR48 441 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 K7EQS6 105 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 TLR4O00206 839 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 PGRMC2O15173 223 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 RNGTTO60942 597 aaKnown RBP9.52□□□□□ -0.89
VPS53-220ENST00000576149 ADRA2AP08913 450 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 PIPP12273 146 aaPredicted RBP9.52□□□□□ -0.89
VPS53-220ENST00000576149 PEBP1P30086 187 aaKnown RBP9.52□□□□□ -0.89
VPS53-220ENST00000576149 PPP2R1BP30154 601 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 SOX9P48436 509 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 KHKP50053 298 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 BPIFB3P59826 476 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms