RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 FBXL19-AS1Q494R0 122 aa19.33■□□□□ 0.68
VPS53-216ENST00000574029 ACSF3Q4G176 576 aaPredicted RBP19.33■□□□□ 0.68
VPS53-216ENST00000574029 TMEM198Q66K66 360 aa19.33■□□□□ 0.68
VPS53-216ENST00000574029 POMZP3Q6PJE2 187 aa19.33■□□□□ 0.68
VPS53-216ENST00000574029 MYLK4Q86YV6 388 aaPredicted RBP19.33■□□□□ 0.68
VPS53-216ENST00000574029 TNIP2Q8NFZ5 429 aa19.33■□□□□ 0.68
VPS53-216ENST00000574029 RHEBL1Q8TAI7 183 aa19.33■□□□□ 0.68
VPS53-216ENST00000574029 TP53INP1Q96A56 240 aa19.33■□□□□ 0.68
VPS53-216ENST00000574029 ZNF597Q96LX8 424 aa19.33■□□□□ 0.68
VPS53-216ENST00000574029 CLEC4MQ9H2X3 399 aaPredicted RBP19.33■□□□□ 0.68
VPS53-216ENST00000574029 PSD3Q9NYI0 1048 aa19.33■□□□□ 0.68
VPS53-216ENST00000574029 ANGPTL3Q9Y5C1 460 aa19.33■□□□□ 0.68
VPS53-216ENST00000574029 FREM3P0C091 2139 aa19.33■□□□□ 0.68
VPS53-216ENST00000574029 C15orf38-AP3S2A0A0A6YYH1 394 aa19.32■□□□□ 0.68
VPS53-216ENST00000574029 C2orf92A0A1B0GVN3 265 aa19.32■□□□□ 0.68
VPS53-216ENST00000574029 GLOD5A6NK44 160 aa19.32■□□□□ 0.68
VPS53-216ENST00000574029 SYCE1LA8MT33 242 aa19.32■□□□□ 0.68
VPS53-216ENST00000574029 DVL2O14641 736 aa19.32■□□□□ 0.68
VPS53-216ENST00000574029 UGDHO60701 494 aa19.32■□□□□ 0.68
VPS53-216ENST00000574029 FAM58BPP0C7Q3 252 aa19.32■□□□□ 0.68
VPS53-216ENST00000574029 NR2F6P10588 404 aa19.32■□□□□ 0.68
VPS53-216ENST00000574029 GDF1P27539 372 aa19.32■□□□□ 0.68
VPS53-216ENST00000574029 TIMP3P35625 211 aa19.32■□□□□ 0.68
VPS53-216ENST00000574029 ASCL1P50553 236 aa19.32■□□□□ 0.68
VPS53-216ENST00000574029 PHEXP78562 749 aa19.32■□□□□ 0.68
VPS53-216ENST00000574029 CYP20A1Q6UW02 462 aa19.32■□□□□ 0.68
VPS53-216ENST00000574029 MAATS1Q7Z4T9 603 aa19.32■□□□□ 0.68
VPS53-216ENST00000574029 CENPLQ8N0S6 344 aaPredicted RBP19.32■□□□□ 0.68
VPS53-216ENST00000574029 DIO2Q92813 273 aa19.32■□□□□ 0.68
VPS53-216ENST00000574029 UCN3Q969E3 161 aa19.32■□□□□ 0.68
VPS53-216ENST00000574029 REPS1Q96D71 796 aa19.32■□□□□ 0.68
VPS53-216ENST00000574029 TIMP4Q99727 224 aa19.32■□□□□ 0.68
VPS53-216ENST00000574029 ACTR8Q9H981 624 aa19.32■□□□□ 0.68
VPS53-216ENST00000574029 ACOT9Q9Y305 439 aa19.32■□□□□ 0.68
VPS53-216ENST00000574029 CCDC189A1A4V9 331 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 A6NNC1 897 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 CAPN14A8MX76 684 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 KDM4EB2RXH2 506 aaPredicted RBP19.31■□□□□ 0.68
VPS53-216ENST00000574029 KIF2AO00139 706 aaPredicted RBP19.31■□□□□ 0.68
VPS53-216ENST00000574029 TP53I11O14683 189 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 RAD51CO43502 376 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 AIFM1O95831 613 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 HPNP05981 417 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 BMP5P22003 454 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 SSTR4P31391 388 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 RPS6KA2Q15349 733 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 FLYWCH1Q4VC44 716 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 TMEM64Q6YI46 380 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 LACC1Q8IV20 430 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 WDR20Q8TBZ3 569 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 SPPL2AQ8TCT8 520 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 FBF1Q8TES7 1133 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 FAM222BQ8WU58 562 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 KCTD4Q8WVF5 259 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 RNASE6Q93091 150 aaKnown RBP19.31■□□□□ 0.68
VPS53-216ENST00000574029 LRRC46Q96FV0 321 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 RMND5BQ96G75 393 aaPredicted RBP19.31■□□□□ 0.68
VPS53-216ENST00000574029 SECISBP2Q96T21 854 aaKnown RBP19.31■□□□□ 0.68
VPS53-216ENST00000574029 ANGPTL4Q9BY76 406 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 PRDM14Q9GZV8 571 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 UBQLN3Q9H347 655 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 WDR41Q9HAD4 459 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 CXorf21Q9HAI6 301 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 SNX15Q9NRS6 342 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 ZNF629Q9UEG4 869 aaPredicted RBP19.31■□□□□ 0.68
VPS53-216ENST00000574029 EXPH5Q8NEV8 1989 aa19.31■□□□□ 0.68
VPS53-216ENST00000574029 MTORP42345 2549 aa19.3■□□□□ 0.68
VPS53-216ENST00000574029 PRRC2AP48634 2157 aaKnown RBP19.3■□□□□ 0.68
VPS53-216ENST00000574029 A0A087X1B8 175 aa19.3■□□□□ 0.68
VPS53-216ENST00000574029 SNX4O95219 450 aa19.3■□□□□ 0.68
VPS53-216ENST00000574029 KLK2P20151 261 aa19.3■□□□□ 0.68
VPS53-216ENST00000574029 STX2P32856 288 aa19.3■□□□□ 0.68
VPS53-216ENST00000574029 CDK9P50750 372 aaKnown RBP19.3■□□□□ 0.68
VPS53-216ENST00000574029 ALDH18A1P54886 795 aaKnown RBP19.3■□□□□ 0.68
VPS53-216ENST00000574029 WNT3P56703 355 aa19.3■□□□□ 0.68
VPS53-216ENST00000574029 FBXW4P57775 412 aa19.3■□□□□ 0.68
VPS53-216ENST00000574029 IRF9Q00978 393 aa19.3■□□□□ 0.68
VPS53-216ENST00000574029 FUT7Q11130 342 aa19.3■□□□□ 0.68
VPS53-216ENST00000574029 NAB1Q13506 487 aa19.3■□□□□ 0.68
VPS53-216ENST00000574029 PCBP2Q15366 365 aaKnown RBP eCLIP19.3■□□□□ 0.685e-9■■■■■ 51.4
VPS53-216ENST00000574029 CPSF6Q16630 551 aaKnown RBP eCLIP19.3■□□□□ 0.68
VPS53-216ENST00000574029 PFKFB4Q16877 469 aa19.3■□□□□ 0.68
VPS53-216ENST00000574029 FNDC7Q5VTL7 733 aa19.3■□□□□ 0.68
VPS53-216ENST00000574029 OR52E8Q6IFG1 317 aa19.3■□□□□ 0.68
VPS53-216ENST00000574029 CCDC91Q7Z6B0 441 aa19.3■□□□□ 0.68
VPS53-216ENST00000574029 NUDT13Q86X67 352 aa19.3■□□□□ 0.68
VPS53-216ENST00000574029 CDC20BQ86Y33 519 aa19.3■□□□□ 0.68
VPS53-216ENST00000574029 RILPQ96NA2 401 aa19.3■□□□□ 0.68
VPS53-216ENST00000574029 FOXD3Q9UJU5 478 aaPredicted RBP19.3■□□□□ 0.68
VPS53-216ENST00000574029 CBLCQ9ULV8 474 aa19.3■□□□□ 0.68
VPS53-216ENST00000574029 NPFFR2Q9Y5X5 522 aa19.3■□□□□ 0.68
VPS53-216ENST00000574029 A0A1W2PS29 197 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 LRRC14BA6NHZ5 514 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 FOXE1O00358 373 aaPredicted RBP19.29■□□□□ 0.68
VPS53-216ENST00000574029 TRAPPC6AO75865 159 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 GFAPP14136 432 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 DNASE1P24855 282 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 MAGEA4P43358 317 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 CKAP4Q07065 602 aaKnown RBP19.29■□□□□ 0.68
VPS53-216ENST00000574029 GTF2H2Q13888 395 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms